Package: fcScan 1.21.0
Pierre Khoueiry
fcScan: fcScan for detecting clusters of coordinates with user defined options
This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.
Authors:
fcScan_1.21.0.tar.gz
fcScan_1.21.0.zip(r-4.5)fcScan_1.21.0.zip(r-4.4)fcScan_1.21.0.zip(r-4.3)
fcScan_1.21.0.tgz(r-4.4-any)fcScan_1.21.0.tgz(r-4.3-any)
fcScan_1.21.0.tar.gz(r-4.5-noble)fcScan_1.21.0.tar.gz(r-4.4-noble)
fcScan_1.21.0.tgz(r-4.4-emscripten)fcScan_1.21.0.tgz(r-4.3-emscripten)
fcScan.pdf |fcScan.html✨
fcScan/json (API)
NEWS
| # Install 'fcScan' in R: |
| install.packages('fcScan', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:fcScan-1.21.0(bioc 3.21)fcScan-1.20.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:59bb72699c. Checks:OK: 4 ERROR: 3. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | ERROR | Nov 29 2024 |
| R-4.5-linux | OK | Nov 29 2024 |
| R-4.4-win | ERROR | Nov 29 2024 |
| R-4.4-mac | OK | Nov 29 2024 |
| R-4.3-win | ERROR | Nov 29 2024 |
| R-4.3-mac | OK | Nov 29 2024 |
Exports:getCluster
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemclicodetoolscpp11crayoncurlDBIDelayedArraydoParallelfastmapforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrplyrpngR6RcppRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsVariantAnnotationvctrsXMLXVectoryamlzlibbioc
