Package: fcScan 1.27.0
fcScan: fcScan for detecting clusters of coordinates with user defined options
This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.
Authors:
fcScan_1.27.0.tar.gz
fcScan_1.27.0.zip(r-4.7-any)fcScan_1.27.0.zip(r-4.6-any)fcScan_1.27.0.zip(r-4.5-any)
fcScan_1.27.0.tgz(r-4.6-any)fcScan_1.27.0.tgz(r-4.5-any)
fcScan_1.27.0.tar.gz(r-4.7-any)fcScan_1.27.0.tar.gz(r-4.6-any)
fcScan_1.27.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fcScan/json (API)
| # Install 'fcScan' in R: |
| install.packages('fcScan', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:fcScan-1.27.0(bioc 3.24)fcScan-1.26.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:d0d8416dde. Checks:1 NOTE, 6 OK, 3 ERROR. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 182 | ||
| linux-devel | OK | 540 | ||
| source / vignettes | OK | 409 | ||
| linux-release | OK | 853 | ||
| macos-release | OK | 287 | ||
| macos-oldrel | OK | 431 | ||
| windows-devel | ERROR | 888 | ||
| windows-release | ERROR | 631 | ||
| windows-oldrel | ERROR | 1008 | ||
| wasm-release | OK | 169 |
Exports:getCluster
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArraydoParallelfastmapforeachformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplyrpngR6RcppRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentsysVariantAnnotationvctrsXMLXVectoryaml
