Package: fcScan 1.19.0
Pierre Khoueiry
fcScan: fcScan for detecting clusters of coordinates with user defined options
This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.
Authors:
fcScan_1.19.0.tar.gz
fcScan_1.19.0.zip(r-4.5)fcScan_1.19.0.zip(r-4.4)fcScan_1.19.0.zip(r-4.3)
fcScan_1.19.0.tgz(r-4.4-any)fcScan_1.19.0.tgz(r-4.3-any)
fcScan_1.19.0.tar.gz(r-4.5-noble)fcScan_1.19.0.tar.gz(r-4.4-noble)
fcScan_1.19.0.tgz(r-4.4-emscripten)fcScan_1.19.0.tgz(r-4.3-emscripten)
fcScan.pdf |fcScan.html✨
fcScan/json (API)
NEWS
| # Install 'fcScan' in R: |
| install.packages('fcScan', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:fcScan-1.19.0(bioc 3.20)fcScan-1.18.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:0005855573
Exports:getCluster
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemclicodetoolscpp11crayoncurlDBIDelayedArraydoParallelfastmapforeachformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrplyrpngR6RcppRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsVariantAnnotationvctrsXMLXVectoryamlzlibbioc
