Package: fcScan 1.27.0

Pierre Khoueiry

fcScan: fcScan for detecting clusters of coordinates with user defined options

This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.

Authors:Abdullah El-Kurdi [aut], Ghiwa khalil [aut], Georges Khazen [ctb], Pierre Khoueiry [aut, cre]

fcScan_1.27.0.tar.gz
fcScan_1.27.0.zip(r-4.7)fcScan_1.27.0.zip(r-4.6)fcScan_1.27.0.zip(r-4.5)
fcScan_1.27.0.tgz(r-4.6-any)fcScan_1.27.0.tgz(r-4.5-any)
fcScan_1.27.0.tar.gz(r-4.7-any)fcScan_1.27.0.tar.gz(r-4.6-any)
fcScan_1.27.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fcScan/json (API)

# Install 'fcScan' in R:
install.packages('fcScan', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:fcScan-1.27.0(bioc 3.24)fcScan-1.26.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genomeannotationclustering

2.30 score 1 scripts 1 mentions 1 exports 74 dependencies

Last updated from:d0d8416dde. Checks:1 NOTE, 8 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE206
linux-devel-x86_64ERROR399
source / vignettesERROR261
linux-release-x86_64ERROR377
macos-release-arm64ERROR206
macos-oldrel-arm64ERROR178
windows-develERROR293
windows-releaseERROR281
windows-oldrelERROR305
wasm-releaseOK175

Exports:getCluster

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArraydoParallelfastmapforeachformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplyrpngR6RcppRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentsysVariantAnnotationvctrsXMLXVectoryaml