Package: epivizrStandalone 1.41.0

Hector Corrada Bravo

epivizrStandalone: Run Epiviz Interactive Genomic Data Visualization App within R

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Authors:Hector Corrada Bravo, Jayaram Kancherla

epivizrStandalone_1.41.0.tar.gz
epivizrStandalone_1.41.0.zip(r-4.7)epivizrStandalone_1.41.0.zip(r-4.6)epivizrStandalone_1.41.0.zip(r-4.5)
epivizrStandalone_1.41.0.tgz(r-4.6-any)epivizrStandalone_1.41.0.tgz(r-4.5-any)
epivizrStandalone_1.41.0.tar.gz(r-4.7-any)epivizrStandalone_1.41.0.tar.gz(r-4.6-any)
epivizrStandalone_1.41.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
epivizrStandalone/json (API)

# Install 'epivizrStandalone' in R:

install.packages('epivizrStandalone', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:epivizrStandalone-1.41.0(bioc 3.24)epivizrStandalone-1.40.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

visualization infrastructure gui

3.48 score 3 scripts 3 exports 96 dependencies

Last updated from:f5fb41fd1e. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	265
linux-devel-x86_64	WARNING	515
source / vignettes	OK	360
linux-release-x86_64	WARNING	553
macos-release-arm64	WARNING	237
macos-oldrel-arm64	WARNING	269
windows-devel	WARNING	389
windows-release	WARNING	382
windows-oldrel	WARNING	362
wasm-release	OK	267

Exports:setStandalone startStandalone startStandaloneApp

Dependencies:abind AnnotationDbi AnnotationFilter askpass BH Biobase BiocBaseUtils BiocGenerics BiocIO BiocManager BiocParallel Biostrings bit bit64 bitops blob bumphunter cachem cigarillo cli codetools cpp11 crayon curl DBI DelayedArray digest doRNG ensembldb epivizr epivizrData epivizrServer fastmap foreach formatR futile.logger futile.options generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges git2r glue graph httpuv httr IRanges iterators jsonlite KEGGREST lambda.r later lattice lazyeval lifecycle limma locfit magrittr Matrix MatrixGenerics matrixStats memoise mime openssl OrganismDbi otel pkgconfig png promises ProtGenerics R6 RBGL Rcpp RCurl restfulr Rhtslib rjson rlang rngtools Rsamtools RSQLite rtracklayer S4Arrays S4Vectors Seqinfo snow SparseArray statmod SummarizedExperiment sys UCSC.utils vctrs XML XVector yaml

Introduction to epivizrStandalone

Launch Epiviz Desktop App

Rendered fromEpivizrStandalone.Rmdusingknitr::rmarkdown

Last update: 2017-10-29
Started: 2016-05-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Set settings for epiviz standalone repository.	setStandalone
Start a standalone 'epivizr' session.	startStandalone
Start a standalone 'epivizr' session.	startStandaloneApp