Package: epivizrStandalone 1.35.0

Hector Corrada Bravo

epivizrStandalone: Run Epiviz Interactive Genomic Data Visualization App within R

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Authors:Hector Corrada Bravo, Jayaram Kancherla

epivizrStandalone_1.35.0.tar.gz
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epivizrStandalone_1.35.0.tgz(r-4.4-any)epivizrStandalone_1.35.0.tgz(r-4.3-any)
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epivizrStandalone.pdf |epivizrStandalone.html✨
epivizrStandalone/json (API)
NEWS

# Install 'epivizrStandalone' in R:
install.packages('epivizrStandalone', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:epivizrStandalone-1.35.0(bioc 3.21)epivizrStandalone-1.34.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

visualizationinfrastructuregui

3.30 score 3 scripts 196 downloads 3 exports 117 dependencies

Last updated 3 months agofrom:d990d4e795. Checks:1 OK, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 13 2025
R-4.5-winWARNINGJan 13 2025
R-4.5-linuxWARNINGJan 13 2025
R-4.4-winWARNINGJan 13 2025
R-4.4-macWARNINGJan 13 2025
R-4.3-winWARNINGJan 13 2025
R-4.3-macWARNINGJan 13 2025

Exports:setStandalonestartStandalonestartStandaloneApp

Dependencies:abindAnnotationDbiAnnotationFilteraskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbitbit64bitopsblobbumphuntercachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdoRNGdplyrensembldbepivizrepivizrDataepivizrServerfansifastmapfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgit2rgluegraphhmshttpuvhttrhttr2IRangesiteratorsjsonliteKEGGRESTlambda.rlaterlatticelazyevallifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslOrganismDbipillarpkgconfigplogrpngprettyunitsprogresspromisesProtGenericspurrrR6rappdirsRBGLRcppRCurlrestfulrRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryamlzlibbioc

Introduction to epivizrStandalone

Héctor Corrada Bravo

Rendered fromEpivizrStandalone.Rmdusingknitr::rmarkdownon Jan 13 2025.

Last update: 2017-10-29
Started: 2016-05-02