Package: epivizrData 1.33.0

Hector Corrada Bravo

epivizrData: Data Management API for epiviz interactive visualization app

Serve data from Bioconductor Objects through a WebSocket connection.

Authors:Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

epivizrData_1.33.0.tar.gz
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epivizrData.pdf |epivizrData.html✨
epivizrData/json (API)
NEWS

# Install 'epivizrData' in R:

install.packages('epivizrData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiviz/epivizrdata/issues

On BioConductor:epivizrData-1.33.0(bioc 3.20)epivizrData-1.32.0(bioc 3.19)

bioconductor-package

8 exports 1.75 score 106 dependencies 4 dependents

Last updated 2 months agofrom:a2df6d5ef6

Exports:.emptyEpivizMeasurement .emptyEpivizSparseMeasurement ahToMySQL as.data.frame as.list createMgr register show

Dependencies:abind AnnotationDbi AnnotationFilter askpass BH Biobase BiocFileCache BiocGenerics BiocIO BiocManager BiocParallel biomaRt Biostrings bit bit64 bitops blob cachem cli codetools cpp11 crayon curl DBI dbplyr DelayedArray digest dplyr ensembldb epivizrServer fansi fastmap filelock formatR futile.logger futile.options generics GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges glue graph hms httpuv httr httr2 IRanges jsonlite KEGGREST lambda.r later lattice lazyeval lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl OrganismDbi pillar pkgconfig plogr png prettyunits progress promises ProtGenerics purrr R6 rappdirs RBGL Rcpp RCurl restfulr Rhtslib rjson rlang Rsamtools RSQLite rtracklayer S4Arrays S4Vectors snow SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect txdbmaker UCSC.utils utf8 vctrs withr XML xml2 XVector yaml zlibbioc

epivizrData Usage

Héctor Corrada Bravo

Rendered fromepivizrData.Rmdusingknitr::rmarkdownon Jun 17 2024.

Last update: 2020-04-09
Started: 2016-04-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Create empty Epiviz Measurement	.emptyEpivizMeasurement
Create empty Epiviz Measurement	.emptyEpivizSparseMeasurement
Utility function to import data to a MySQL database from Annotation Hub	ahToMySQL
Generic as.data.frame method for EpivizData objects	as.data.frame,EpivizData-method
Convert 'EpivizMeasurement' object to 'list'	as.list,EpivizMeasurement-method
Convert 'SparseEpivizMeasurement' object to 'list'	as.list,SparseEpivizMeasurement-method
Create a data manager for epiviz app	createMgr
Data container for interval data.	EpivizBlockData EpivizBlockData-class
Container for basepair level numeric data	EpivizBpData EpivizBpData-class
Data container for epiviz data server	EpivizData EpivizData-class
Class providing data manager for epiviz app	EpivizDataMgr EpivizDataMgr-class
Data container for RangedSummarizedExperiment objects	EpivizFeatureData EpivizFeatureData-class
Container for gene annotation data	EpivizGeneInfoData EpivizGeneInfoData-class
Class encapsulating a measurement description for epiviz app.	EpivizMeasurement EpivizMeasurement-class
epivizrData	epivizrData
Generic method to register data to the data server	register register,data.frame-method register,EnsDb-method register,ExpressionSet-method register,GenomicRanges-method register,OrganismDb-method register,RangedSummarizedExperiment-method register,TxDb-method
Display measurement datasourceId and id	show,EpivizMeasurement-method
Display measurement datasourceId and id	show,SparseEpivizMeasurement-method
Class encapsulating a measurement description for epiviz app.	SparseEpivizMeasurement SparseEpivizMeasurement-class