Package: epivizrData 1.35.0

Hector Corrada Bravo

epivizrData: Data Management API for epiviz interactive visualization app

Serve data from Bioconductor Objects through a WebSocket connection.

Authors:Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

epivizrData_1.35.0.tar.gz
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epivizrData.pdf |epivizrData.html✨
epivizrData/json (API)
NEWS

# Install 'epivizrData' in R:
install.packages('epivizrData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/epiviz/epivizrdata/issues

On BioConductor:epivizrData-1.33.0(bioc 3.20)epivizrData-1.32.0(bioc 3.19)

infrastructurevisualization

5.08 score 1 stars 4 packages 4 scripts 230 downloads 8 exports 106 dependencies

Last updated 15 days agofrom:0d48393292. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:.emptyEpivizMeasurement.emptyEpivizSparseMeasurementahToMySQLas.data.frameas.listcreateMgrregistershow

Dependencies:abindAnnotationDbiAnnotationFilteraskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrensembldbepivizrServerfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphhmshttpuvhttrhttr2IRangesjsonliteKEGGRESTlambda.rlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslOrganismDbipillarpkgconfigplogrpngprettyunitsprogresspromisesProtGenericspurrrR6rappdirsRBGLRcppRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryamlzlibbioc

epivizrData Usage

Héctor Corrada Bravo

Rendered fromepivizrData.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2020-04-09
Started: 2016-04-15

Readme and manuals

Help Manual

Help pageTopics
Create empty Epiviz Measurement.emptyEpivizMeasurement
Create empty Epiviz Measurement.emptyEpivizSparseMeasurement
Utility function to import data to a MySQL database from Annotation HubahToMySQL
Generic as.data.frame method for EpivizData objectsas.data.frame,EpivizData-method
Convert 'EpivizMeasurement' object to 'list'as.list,EpivizMeasurement-method
Convert 'SparseEpivizMeasurement' object to 'list'as.list,SparseEpivizMeasurement-method
Create a data manager for epiviz appcreateMgr
Data container for interval data.EpivizBlockData EpivizBlockData-class
Container for basepair level numeric dataEpivizBpData EpivizBpData-class
Data container for epiviz data serverEpivizData EpivizData-class
Class providing data manager for epiviz appEpivizDataMgr EpivizDataMgr-class
Data container for RangedSummarizedExperiment objectsEpivizFeatureData EpivizFeatureData-class
Container for gene annotation dataEpivizGeneInfoData EpivizGeneInfoData-class
Class encapsulating a measurement description for epiviz app.EpivizMeasurement EpivizMeasurement-class
epivizrDataepivizrData
Generic method to register data to the data serverregister register,data.frame-method register,EnsDb-method register,ExpressionSet-method register,GenomicRanges-method register,OrganismDb-method register,RangedSummarizedExperiment-method register,TxDb-method
Display measurement datasourceId and idshow,EpivizMeasurement-method
Display measurement datasourceId and idshow,SparseEpivizMeasurement-method
Class encapsulating a measurement description for epiviz app.SparseEpivizMeasurement SparseEpivizMeasurement-class