Package: epivizrData 1.41.0

Hector Corrada Bravo

epivizrData: Data Management API for epiviz interactive visualization app

Serve data from Bioconductor Objects through a WebSocket connection.

Authors:Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

epivizrData_1.41.0.tar.gz
epivizrData_1.41.0.zip(r-4.7)epivizrData_1.41.0.zip(r-4.6)epivizrData_1.41.0.zip(r-4.5)
epivizrData_1.41.0.tgz(r-4.6-any)epivizrData_1.41.0.tgz(r-4.5-any)
epivizrData_1.41.0.tar.gz(r-4.7-any)epivizrData_1.41.0.tar.gz(r-4.6-any)
epivizrData_1.41.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
epivizrData/json (API)

# Install 'epivizrData' in R:

install.packages('epivizrData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiviz/epivizrdata/issues

On BioConductor:epivizrData-1.41.0(bioc 3.24)epivizrData-1.40.0(bioc 3.23)

infrastructure visualization

5.26 score 1 stars 4 packages 6 scripts 379 downloads 8 exports 84 dependencies

Last updated from:5fdc17406c. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	393
linux-devel-x86_64	NOTE	442
source / vignettes	OK	464
linux-release-x86_64	NOTE	589
macos-release-arm64	NOTE	380
macos-oldrel-arm64	NOTE	275
windows-devel	NOTE	426
windows-release	NOTE	409
windows-oldrel	NOTE	427
wasm-release	OK	336

Exports:.emptyEpivizMeasurement .emptyEpivizSparseMeasurement ahToMySQL as.data.frame as.list createMgr register show

Dependencies:abind AnnotationDbi AnnotationFilter askpass BH Biobase BiocBaseUtils BiocGenerics BiocIO BiocManager BiocParallel Biostrings bit bit64 bitops blob cachem cigarillo cli codetools cpp11 crayon curl DBI DelayedArray ensembldb epivizrServer fastmap formatR futile.logger futile.options generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges glue graph httpuv httr IRanges jsonlite KEGGREST lambda.r later lattice lazyeval lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl OrganismDbi otel pkgconfig png promises ProtGenerics R6 RBGL Rcpp RCurl restfulr Rhtslib rjson rlang Rsamtools RSQLite rtracklayer S4Arrays S4Vectors Seqinfo snow SparseArray SummarizedExperiment sys UCSC.utils vctrs XML XVector yaml

epivizrData Usage

Usage

Rendered fromepivizrData.Rmdusingknitr::rmarkdown

Last update: 2020-04-09
Started: 2016-04-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Create empty Epiviz Measurement	.emptyEpivizMeasurement
Create empty Epiviz Measurement	.emptyEpivizSparseMeasurement
Utility function to import data to a MySQL database from Annotation Hub	ahToMySQL
Generic as.data.frame method for EpivizData objects	as.data.frame,EpivizData-method
Convert 'EpivizMeasurement' object to 'list'	as.list,EpivizMeasurement-method
Convert 'SparseEpivizMeasurement' object to 'list'	as.list,SparseEpivizMeasurement-method
Create a data manager for epiviz app	createMgr
Data container for interval data.	EpivizBlockData EpivizBlockData-class
Container for basepair level numeric data	EpivizBpData EpivizBpData-class
Data container for epiviz data server	EpivizData EpivizData-class
Class providing data manager for epiviz app	EpivizDataMgr EpivizDataMgr-class
Data container for RangedSummarizedExperiment objects	EpivizFeatureData EpivizFeatureData-class
Container for gene annotation data	EpivizGeneInfoData EpivizGeneInfoData-class
Class encapsulating a measurement description for epiviz app.	EpivizMeasurement EpivizMeasurement-class
epivizrData	epivizrData
Generic method to register data to the data server	register register,data.frame-method register,EnsDb-method register,ExpressionSet-method register,GenomicRanges-method register,OrganismDb-method register,RangedSummarizedExperiment-method register,TxDb-method
Display measurement datasourceId and id	show,EpivizMeasurement-method
Display measurement datasourceId and id	show,SparseEpivizMeasurement-method
Class encapsulating a measurement description for epiviz app.	SparseEpivizMeasurement SparseEpivizMeasurement-class