Package: easylift 1.11.0

Abdullah Al Nahid

easylift: An R package to perform genomic liftover

The easylift package provides a convenient tool for genomic liftover operations between different genome assemblies. It seamlessly works with Bioconductor's GRanges objects and chain files from the UCSC Genome Browser, allowing for straightforward handling of genomic ranges across various genome versions. One noteworthy feature of easylift is its integration with the BiocFileCache package. This integration automates the management and caching of chain files necessary for liftover operations. Users no longer need to manually specify chain file paths in their function calls, reducing the complexity of the liftover process.

Authors:Abdullah Al Nahid [aut, cre], Hervé Pagès [aut, rev], Michael Love [aut, rev]

easylift_1.11.0.tar.gz
easylift_1.11.0.zip(r-4.7)easylift_1.11.0.zip(r-4.6)easylift_1.11.0.zip(r-4.5)
easylift_1.11.0.tgz(r-4.6-any)easylift_1.11.0.tgz(r-4.5-any)
easylift_1.11.0.tar.gz(r-4.7-any)easylift_1.11.0.tar.gz(r-4.6-any)
easylift_1.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
easylift/json (API)
NEWS

# Install 'easylift' in R:
install.packages('easylift', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nahid18/easylift/issues

Pkgdown/docs site:https://nahid18.github.io

On BioConductor:easylift-1.11.0(bioc 3.24)easylift-1.10.0(bioc 3.23)

softwareworkflowstepsequencingcoveragegenomeassemblydataimport

5.41 score 8 stars 16 scripts 282 downloads 1 exports 84 dependencies

Last updated from:5953e13cd2. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE189
linux-devel-x86_64NOTE388
source / vignettesOK271
linux-release-x86_64NOTE407
macos-release-arm64NOTE251
macos-oldrel-arm64NOTE226
windows-develNOTE283
windows-releaseNOTE289
windows-oldrelNOTE272
wasm-releaseOK158

Exports:easylift

Dependencies:abindaskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydplyrfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicRangesgluehttrhttr2IRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLXVectoryaml

Perform Genomic Liftover

Rendered fromeasylift.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-10-24
Started: 2023-08-25