Package: dupRadar 1.43.0

Sergi Sayols

dupRadar: Assessment of duplication rates in RNA-Seq datasets

Duplication rate quality control for RNA-Seq datasets.

Authors:Sergi Sayols <[email protected]>, Holger Klein <[email protected]>

dupRadar_1.43.0.tar.gz
dupRadar_1.43.0.zip(r-4.7)dupRadar_1.43.0.zip(r-4.6)dupRadar_1.43.0.zip(r-4.5)
dupRadar_1.43.0.tgz(r-4.6-any)dupRadar_1.43.0.tgz(r-4.5-any)
dupRadar_1.43.0.tar.gz(r-4.7-any)dupRadar_1.43.0.tar.gz(r-4.6-any)
dupRadar_1.43.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
dupRadar/json (API)
NEWS

# Install 'dupRadar' in R:
install.packages('dupRadar', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ssayols/dupradar/issues

Datasets:
  • dupRadar_examples - Example data containing precomputed matrices for two RNASeq experiments

On BioConductor:dupRadar-1.43.0(bioc 3.24)dupRadar-1.42.0(bioc 3.23)

technologysequencingrnaseqqualitycontrolimmunooncology

7.42 score 3 stars 73 scripts 481 downloads 23 mentions 17 exports 4 dependencies

Last updated from:26451be093. Checks:1 FAILURE, 4 NOTE, 2 OK, 3 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksFAILURE443
linux-devel-x86_64NOTE209
source / vignettesOK254
linux-release-x86_64NOTE244
macos-release-arm64NOTE110
macos-oldrel-arm64NOTE89
windows-develERROR96
windows-releaseERROR90
windows-oldrelERROR97
wasm-releaseOK119

Exports:analyzeDupratescumulativeDuprateBarplotduprateExpBoxplotduprateExpDensPlotduprateExpFitduprateExpIdentifyduprateExpPlotexpressionHistgetBinDuplicationgetBinRpkMeangetDupMatBingetDupMatStatsgetDynamicRangegetRpkBinReadCountFractiongetRpkCumulativeReadCountFractionmarkDuplicatesreadcountExpBoxplot

Dependencies:KernSmoothlatticeMatrixRsubread

Using the dupRadar package

Sergi Sayols, Holger Klein

Rendered fromdupRadar.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-02-27
Started: 2015-09-28