Package: dupRadar 1.35.0

Sergi Sayols

dupRadar: Assessment of duplication rates in RNA-Seq datasets

Duplication rate quality control for RNA-Seq datasets.

Authors:Sergi Sayols <[email protected]>, Holger Klein <[email protected]>

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dupRadar.pdf |dupRadar.html✨
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NEWS

# Install 'dupRadar' in R:
install.packages('dupRadar', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ssayols/dupradar/issues

Datasets:
  • dupRadar_examples - Example data containing precomputed matrices for two RNASeq experiments

On BioConductor:dupRadar-1.35.0(bioc 3.20)dupRadar-1.34.0(bioc 3.19)

bioconductor-package

17 exports 1.00 score 4 dependencies 23 mentions

Last updated 2 months agofrom:59703ffdde

Exports:analyzeDupratescumulativeDuprateBarplotduprateExpBoxplotduprateExpDensPlotduprateExpFitduprateExpIdentifyduprateExpPlotexpressionHistgetBinDuplicationgetBinRpkMeangetDupMatBingetDupMatStatsgetDynamicRangegetRpkBinReadCountFractiongetRpkCumulativeReadCountFractionmarkDuplicatesreadcountExpBoxplot

Dependencies:KernSmoothlatticeMatrixRsubread

Using the dupRadar package

Sergi Sayols, Holger Klein

Rendered fromdupRadar.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2020-02-27
Started: 2015-09-28