Package: dupRadar 1.37.0

Sergi Sayols

dupRadar: Assessment of duplication rates in RNA-Seq datasets

Duplication rate quality control for RNA-Seq datasets.

Authors:Sergi Sayols <[email protected]>, Holger Klein <[email protected]>

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dupRadar.pdf |dupRadar.html✨
dupRadar/json (API)
NEWS

# Install 'dupRadar' in R:
install.packages('dupRadar', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ssayols/dupradar/issues

Datasets:
  • dupRadar_examples - Example data containing precomputed matrices for two RNASeq experiments

On BioConductor:dupRadar-1.37.0(bioc 3.21)dupRadar-1.36.0(bioc 3.20)

technologysequencingrnaseqqualitycontrolimmunooncology

6.78 score 2 stars 60 scripts 326 downloads 23 mentions 17 exports 4 dependencies

Last updated 4 months agofrom:9afe62b26f. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 16 2025
R-4.5-winNOTEFeb 16 2025
R-4.5-macNOTEFeb 16 2025
R-4.5-linuxNOTEFeb 16 2025
R-4.4-winNOTEFeb 16 2025
R-4.4-macNOTEFeb 16 2025
R-4.3-winNOTEFeb 16 2025
R-4.3-macNOTEFeb 16 2025

Exports:analyzeDupratescumulativeDuprateBarplotduprateExpBoxplotduprateExpDensPlotduprateExpFitduprateExpIdentifyduprateExpPlotexpressionHistgetBinDuplicationgetBinRpkMeangetDupMatBingetDupMatStatsgetDynamicRangegetRpkBinReadCountFractiongetRpkCumulativeReadCountFractionmarkDuplicatesreadcountExpBoxplot

Dependencies:KernSmoothlatticeMatrixRsubread

Using the dupRadar package

Sergi Sayols, Holger Klein

Rendered fromdupRadar.Rmdusingknitr::rmarkdownon Feb 16 2025.

Last update: 2020-02-27
Started: 2015-09-28