Package: diffcoexp 1.27.0

Wenbin Wei

diffcoexp: Differential Co-expression Analysis

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Authors:Wenbin Wei, Sandeep Amberkar, Winston Hide

diffcoexp_1.27.0.tar.gz
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diffcoexp.pdf |diffcoexp.html✨
diffcoexp/json (API)
NEWS

# Install 'diffcoexp' in R:
install.packages('diffcoexp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hidelab/diffcoexp/issues

Datasets:

On BioConductor:diffcoexp-1.25.0(bioc 3.20)diffcoexp-1.24.0(bioc 3.19)

geneexpressiondifferentialexpressiontranscriptionmicroarrayonechanneltwochannelrnaseqsequencingcoverageimmunooncology

7.07 score 15 stars 1 packages 37 scripts 328 downloads 3 exports 119 dependencies

Last updated 17 days agofrom:8501abb4de. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winOKOct 30 2024
R-4.5-linuxOKOct 30 2024
R-4.4-winOKOct 30 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 30 2024
R-4.3-macOKOct 31 2024

Exports:coexprcomparecordiffcoexp

Dependencies:abindAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArrayDiffCorrdigestdoParalleldynamicTreeCutevaluatefansifarverfastclusterfastmapfdrtoolfontawesomeforeachforeignFormulafsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2glueGO.dbGPArotationgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemnormtmulttestmunsellnlmennetopensslpcaMethodspillarpkgconfigplogrpngpreprocessCorepsychR6rappdirsRColorBrewerRcpprlangrmarkdownrpartRSQLiterstudioapiS4ArraysS4VectorssassscalesSparseArraystringistringrSummarizedExperimentsurvivalsystibbletinytexUCSC.utilsutf8vctrsviridisviridisLiteWGCNAwithrxfunXVectoryamlzlibbioc

About diffcoexp

Rendered fromdiffcoexp.Rnwusingutils::Sweaveon Oct 30 2024.

Last update: 2020-11-23
Started: 2018-01-17