Package: diffcoexp 1.33.0

Wenbin Wei

diffcoexp: Differential Co-expression Analysis

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Authors:Wenbin Wei, Sandeep Amberkar, Winston Hide

diffcoexp_1.33.0.tar.gz
diffcoexp_1.33.0.zip(r-4.7)diffcoexp_1.33.0.zip(r-4.6)diffcoexp_1.33.0.zip(r-4.5)
diffcoexp_1.33.0.tgz(r-4.6-any)diffcoexp_1.33.0.tgz(r-4.5-any)
diffcoexp_1.33.0.tar.gz(r-4.7-any)diffcoexp_1.33.0.tar.gz(r-4.6-any)
diffcoexp_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
diffcoexp/json (API)

# Install 'diffcoexp' in R:

install.packages('diffcoexp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hidelab/diffcoexp/issues

Datasets:

exprs.1 - Exprs.1
exprs.2 - Exprs.2

On BioConductor:diffcoexp-1.33.0(bioc 3.24)diffcoexp-1.32.0(bioc 3.23)

geneexpression differentialexpression transcription microarray onechannel twochannel rnaseq sequencing coverage immunooncology

6.93 score 17 stars 36 scripts 2 mentions 3 exports 94 dependencies

Last updated from:aee0eebd99. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	266
linux-devel-x86_64	OK	356
source / vignettes	OK	267
linux-release-x86_64	OK	379
macos-release-arm64	OK	179
macos-oldrel-arm64	OK	163
windows-devel	OK	211
windows-release	OK	206
windows-oldrel	OK	226
wasm-release	OK	198

Exports:coexpr comparecor diffcoexp

Dependencies:abind backports base64enc Biobase BiocGenerics bslib cachem checkmate cli cluster codetools colorspace cpp11 data.table DelayedArray DiffCorr digest doParallel dynamicTreeCut evaluate farver fastcluster fastmap fdrtool fontawesome foreach foreign Formula fs generics GenomicRanges ggplot2 glue GPArotation gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets igraph impute IRanges isoband iterators jquerylib jsonlite knitr labeling lattice lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mime mnormt multtest nlme nnet pcaMethods pkgconfig preprocessCore psych R6 rappdirs RColorBrewer Rcpp rlang rmarkdown rpart rstudioapi S4Arrays S4Vectors S7 sass scales Seqinfo SparseArray stringi stringr SummarizedExperiment survival tinytex vctrs viridisLite WGCNA withr xfun XVector yaml

About diffcoexp

Rendered fromdiffcoexp.Rnwusingutils::Sweave

Last update: 2020-11-23
Started: 2018-01-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Identification of gene pairs coexpressed in at least one of two conditions	coexpr
Compare gene-gene correlation coefficients under two conditions	comparecor
Differential co-expression analysis	diffcoexp
exprs.1	exprs.1
exprs.2	exprs.2