Package: diffcoexp 1.27.0

Wenbin Wei

diffcoexp: Differential Co-expression Analysis

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Authors:Wenbin Wei, Sandeep Amberkar, Winston Hide

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diffcoexp.pdf |diffcoexp.html✨
diffcoexp/json (API)
NEWS

# Install 'diffcoexp' in R:
install.packages('diffcoexp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hidelab/diffcoexp/issues

Datasets:

On BioConductor:diffcoexp-1.27.0(bioc 3.21)diffcoexp-1.26.0(bioc 3.20)

geneexpressiondifferentialexpressiontranscriptionmicroarrayonechanneltwochannelrnaseqsequencingcoverageimmunooncology

6.89 score 15 stars 37 scripts 370 downloads 2 mentions 3 exports 119 dependencies

Last updated 5 months agofrom:8501abb4de. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winOKMar 29 2025
R-4.5-macOKMar 29 2025
R-4.5-linuxOKMar 29 2025
R-4.4-winOKMar 29 2025
R-4.4-macOKMar 29 2025
R-4.4-linuxOKMar 29 2025
R-4.3-winOKMar 29 2025
R-4.3-macOKMar 29 2025

Exports:coexprcomparecordiffcoexp

Dependencies:abindAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArrayDiffCorrdigestdoParalleldynamicTreeCutevaluatefansifarverfastclusterfastmapfdrtoolfontawesomeforeachforeignFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2glueGO.dbGPArotationgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemnormtmulttestmunsellnlmennetopensslpcaMethodspillarpkgconfigplogrpngpreprocessCorepsychR6rappdirsRColorBrewerRcpprlangrmarkdownrpartRSQLiterstudioapiS4ArraysS4VectorssassscalesSparseArraystringistringrSummarizedExperimentsurvivalsystibbletinytexUCSC.utilsutf8vctrsviridisviridisLiteWGCNAwithrxfunXVectoryaml

About diffcoexp

Rendered fromdiffcoexp.Rnwusingutils::Sweaveon Mar 29 2025.

Last update: 2020-11-23
Started: 2018-01-17