Package: diffcoexp 1.27.0

Wenbin Wei

diffcoexp: Differential Co-expression Analysis

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Authors:Wenbin Wei, Sandeep Amberkar, Winston Hide

diffcoexp_1.27.0.tar.gz
diffcoexp_1.27.0.zip(r-4.5)diffcoexp_1.27.0.zip(r-4.4)diffcoexp_1.27.0.zip(r-4.3)
diffcoexp_1.27.0.tgz(r-4.4-any)diffcoexp_1.27.0.tgz(r-4.3-any)
diffcoexp_1.27.0.tar.gz(r-4.5-noble)diffcoexp_1.27.0.tar.gz(r-4.4-noble)
diffcoexp_1.27.0.tgz(r-4.4-emscripten)diffcoexp_1.27.0.tgz(r-4.3-emscripten)
diffcoexp.pdf |diffcoexp.html✨
diffcoexp/json (API)
NEWS

# Install 'diffcoexp' in R:
install.packages('diffcoexp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hidelab/diffcoexp/issues

Datasets:

On BioConductor:diffcoexp-1.27.0(bioc 3.21)diffcoexp-1.26.0(bioc 3.20)

geneexpressiondifferentialexpressiontranscriptionmicroarrayonechanneltwochannelrnaseqsequencingcoverageimmunooncology

7.37 score 15 stars 1 packages 37 scripts 339 downloads 2 mentions 3 exports 119 dependencies

Last updated 3 months agofrom:8501abb4de. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 29 2024
R-4.5-winOKDec 31 2024
R-4.5-linuxOKDec 29 2024
R-4.4-winOKDec 31 2024
R-4.4-macOKDec 29 2024
R-4.3-winOKDec 31 2024
R-4.3-macOKDec 29 2024

Exports:coexprcomparecordiffcoexp

Dependencies:abindAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArrayDiffCorrdigestdoParalleldynamicTreeCutevaluatefansifarverfastclusterfastmapfdrtoolfontawesomeforeachforeignFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2glueGO.dbGPArotationgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemnormtmulttestmunsellnlmennetopensslpcaMethodspillarpkgconfigplogrpngpreprocessCorepsychR6rappdirsRColorBrewerRcpprlangrmarkdownrpartRSQLiterstudioapiS4ArraysS4VectorssassscalesSparseArraystringistringrSummarizedExperimentsurvivalsystibbletinytexUCSC.utilsutf8vctrsviridisviridisLiteWGCNAwithrxfunXVectoryaml

About diffcoexp

Rendered fromdiffcoexp.Rnwusingutils::Sweaveon Dec 29 2024.

Last update: 2020-11-23
Started: 2018-01-17