Package: diffcoexp 1.27.0

Wenbin Wei

diffcoexp: Differential Co-expression Analysis

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Authors:Wenbin Wei, Sandeep Amberkar, Winston Hide

diffcoexp_1.27.0.tar.gz
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diffcoexp.pdf |diffcoexp.html✨
diffcoexp/json (API)
NEWS

# Install 'diffcoexp' in R:
install.packages('diffcoexp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hidelab/diffcoexp/issues

Datasets:

On BioConductor:diffcoexp-1.27.0(bioc 3.21)diffcoexp-1.26.0(bioc 3.20)

geneexpressiondifferentialexpressiontranscriptionmicroarrayonechanneltwochannelrnaseqsequencingcoverageimmunooncology

7.37 score 15 stars 1 packages 37 scripts 370 downloads 2 mentions 3 exports 119 dependencies

Last updated 4 months agofrom:8501abb4de. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winOKJan 28 2025
R-4.5-linuxOKJan 28 2025
R-4.4-winOKJan 28 2025
R-4.4-macOKJan 28 2025
R-4.3-winOKJan 28 2025
R-4.3-macOKJan 28 2025

Exports:coexprcomparecordiffcoexp

Dependencies:abindAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArrayDiffCorrdigestdoParalleldynamicTreeCutevaluatefansifarverfastclusterfastmapfdrtoolfontawesomeforeachforeignFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2glueGO.dbGPArotationgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemnormtmulttestmunsellnlmennetopensslpcaMethodspillarpkgconfigplogrpngpreprocessCorepsychR6rappdirsRColorBrewerRcpprlangrmarkdownrpartRSQLiterstudioapiS4ArraysS4VectorssassscalesSparseArraystringistringrSummarizedExperimentsurvivalsystibbletinytexUCSC.utilsutf8vctrsviridisviridisLiteWGCNAwithrxfunXVectoryaml

About diffcoexp

Rendered fromdiffcoexp.Rnwusingutils::Sweaveon Jan 28 2025.

Last update: 2020-11-23
Started: 2018-01-17