Package: diffcoexp 1.25.0

Wenbin Wei

diffcoexp: Differential Co-expression Analysis

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Authors:Wenbin Wei, Sandeep Amberkar, Winston Hide

diffcoexp_1.25.0.tar.gz
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diffcoexp.pdf |diffcoexp.html✨
diffcoexp/json (API)
NEWS

# Install 'diffcoexp' in R:

install.packages('diffcoexp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hidelab/diffcoexp/issues

Datasets:

exprs.1 - Exprs.1
exprs.2 - Exprs.2

On BioConductor:diffcoexp-1.25.0(bioc 3.20)diffcoexp-1.24.0(bioc 3.19)

bioconductor-package

3 exports 1.31 score 118 dependencies 1 dependents 2 mentions

Last updated 2 months agofrom:40ec682936

Exports:coexpr comparecor diffcoexp

Dependencies:abind AnnotationDbi askpass backports base64enc Biobase BiocGenerics Biostrings bit bit64 blob bslib cachem checkmate cli cluster codetools colorspace cpp11 crayon curl data.table DBI DelayedArray DiffCorr digest doParallel dynamicTreeCut evaluate fansi farver fastcluster fastmap fdrtool fontawesome foreach foreign Formula fs GenomeInfoDb GenomeInfoDbData GenomicRanges ggplot2 glue GO.db gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets httr igraph impute IRanges isoband iterators jquerylib jsonlite KEGGREST knitr labeling lattice lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mgcv mime mnormt multtest munsell nlme nnet openssl pcaMethods pillar pkgconfig plogr png preprocessCore psych R6 rappdirs RColorBrewer Rcpp rlang rmarkdown rpart RSQLite rstudioapi S4Arrays S4Vectors sass scales SparseArray stringi stringr SummarizedExperiment survival sys tibble tinytex UCSC.utils utf8 vctrs viridis viridisLite WGCNA withr xfun XVector yaml zlibbioc

About diffcoexp

Rendered fromdiffcoexp.Rnwusingutils::Sweaveon Jun 24 2024.

Last update: 2020-11-23
Started: 2018-01-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Identification of gene pairs coexpressed in at least one of two conditions	coexpr
Compare gene-gene correlation coefficients under two conditions	comparecor
Differential co-expression analysis	diffcoexp
exprs.1	exprs.1
exprs.2	exprs.2