Package: diffcoexp 1.27.0

Wenbin Wei

diffcoexp: Differential Co-expression Analysis

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Authors:Wenbin Wei, Sandeep Amberkar, Winston Hide

diffcoexp_1.27.0.tar.gz
diffcoexp_1.27.0.zip(r-4.5)diffcoexp_1.27.0.zip(r-4.4)diffcoexp_1.27.0.zip(r-4.3)
diffcoexp_1.27.0.tgz(r-4.4-any)diffcoexp_1.27.0.tgz(r-4.3-any)
diffcoexp_1.27.0.tar.gz(r-4.5-noble)diffcoexp_1.27.0.tar.gz(r-4.4-noble)
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diffcoexp.pdf |diffcoexp.html✨
diffcoexp/json (API)
NEWS

# Install 'diffcoexp' in R:
install.packages('diffcoexp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hidelab/diffcoexp/issues

Datasets:

On BioConductor:diffcoexp-1.27.0(bioc 3.21)diffcoexp-1.26.0(bioc 3.20)

geneexpressiondifferentialexpressiontranscriptionmicroarrayonechanneltwochannelrnaseqsequencingcoverageimmunooncology

7.37 score 15 stars 1 packages 37 scripts 339 downloads 2 mentions 3 exports 120 dependencies

Last updated 2 months agofrom:8501abb4de. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winOKNov 29 2024
R-4.5-linuxOKNov 29 2024
R-4.4-winOKNov 29 2024
R-4.4-macOKNov 29 2024
R-4.3-winOKNov 29 2024
R-4.3-macOKNov 29 2024

Exports:coexprcomparecordiffcoexp

Dependencies:abindAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArrayDiffCorrdigestdoParalleldynamicTreeCutevaluatefansifarverfastclusterfastmapfdrtoolfontawesomeforeachforeignFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2glueGO.dbGPArotationgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemnormtmulttestmunsellnlmennetopensslpcaMethodspillarpkgconfigplogrpngpreprocessCorepsychR6rappdirsRColorBrewerRcpprlangrmarkdownrpartRSQLiterstudioapiS4ArraysS4VectorssassscalesSparseArraystringistringrSummarizedExperimentsurvivalsystibbletinytexUCSC.utilsutf8vctrsviridisviridisLiteWGCNAwithrxfunXVectoryamlzlibbioc

About diffcoexp

Rendered fromdiffcoexp.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2020-11-23
Started: 2018-01-17