Package: diffHic 1.37.3
diffHic: Differential Analysis of Hi-C Data
Detects differential interactions across biological conditions in a Hi-C experiment. Methods are provided for read alignment and data pre-processing into interaction counts. Statistical analysis is based on edgeR and supports normalization and filtering. Several visualization options are also available.
Authors:
diffHic_1.37.3.tar.gz
diffHic_1.37.3.zip(r-4.5)diffHic_1.37.3.zip(r-4.4)diffHic_1.37.3.zip(r-4.3)
diffHic_1.37.3.tgz(r-4.4-x86_64)diffHic_1.37.0.tgz(r-4.4-arm64)diffHic_1.37.3.tgz(r-4.3-x86_64)diffHic_1.37.0.tgz(r-4.3-arm64)
diffHic_1.37.3.tar.gz(r-4.5-noble)diffHic_1.37.3.tar.gz(r-4.4-noble)
diffHic.pdf |diffHic.html✨
diffHic/json (API)
NEWS
# Install 'diffHic' in R: |
install.packages('diffHic', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:diffHic-1.37.3(bioc 3.20)diffHic-1.36.1(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:76014cd286
Exports:annotatePairsasDGEListboxPairsclusterPairscompartmentalizeconnectCountsconsolidatePairscorrectedContactcutGenomediClustersdiffHicUsersGuidedomainDirectionsemptyGenomeenrichedPairsextractPatchfilterDiagfilterDirectfilterPeaksfilterTrendedgetAreagetPairDataloadChromosloadDatamarginCountsmatchMarginsmergeCMsmergePairsneighborCountsnormalizeCNVpairParamplotDIplotPlaidpreparePairsprepPseudoPairsprunePairsreadMTX2IntSetreformrotDIrotPlaidsavePairssegmentGenomesquareCountstotalCounts
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecodetoolscpp11crayoncsawcurlDelayedArrayedgeRformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrInteractionSetIRangesjsonlitelambda.rlatticelimmalocfitMatrixMatrixGenericsmatrixStatsmetapodmimeopensslR6RcppRCurlrestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraystatmodSummarizedExperimentsysUCSC.utilsXMLXVectoryamlzlibbioc