Package: derfinderPlot 1.41.0

Leonardo Collado-Torres

derfinderPlot: Plotting functions for derfinder

This package provides plotting functions for results from the derfinder package. This helps separate the graphical dependencies required for making these plots from the core functionality of derfinder.

Authors:Leonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

derfinderPlot_1.41.0.tar.gz
derfinderPlot_1.41.0.zip(r-4.5)derfinderPlot_1.41.0.zip(r-4.4)derfinderPlot_1.41.0.zip(r-4.3)
derfinderPlot_1.41.0.tgz(r-4.4-any)derfinderPlot_1.41.0.tgz(r-4.3-any)
derfinderPlot_1.41.0.tar.gz(r-4.5-noble)derfinderPlot_1.41.0.tar.gz(r-4.4-noble)
derfinderPlot_1.41.0.tgz(r-4.4-emscripten)derfinderPlot_1.41.0.tgz(r-4.3-emscripten)
derfinderPlot.pdf |derfinderPlot.html
derfinderPlot/json (API)
NEWS

# Install 'derfinderPlot' in R:
install.packages('derfinderPlot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/leekgroup/derfinderplot/issues

On BioConductor:derfinderPlot-1.41.0(bioc 3.21)derfinderPlot-1.40.0(bioc 3.20)

differentialexpressionsequencingrnaseqsoftwarevisualizationimmunooncologybioconductorderfinder

5.00 score 2 stars 5 scripts 279 downloads 1 mentions 4 exports 165 dependencies

Last updated 1 months agofrom:b8a1580108. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 13 2025
R-4.5-winOKJan 13 2025
R-4.5-linuxOKJan 13 2025
R-4.4-winOKJan 13 2025
R-4.4-macOKJan 13 2025
R-4.3-winOKJan 13 2025
R-4.3-macOKJan 13 2025

Exports:plotClusterplotOverviewplotRegionCoveragevennRegions

Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibbumphuntercachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdbplyrDelayedArrayderfinderderfinderHelperdichromatdigestdoRNGdplyrensembldbevaluatefansifarverfastmapfilelockfontawesomeforcatsforeachforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicFilesGenomicRangesGGallyggbioggplot2ggstatsgluegraphgridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2IRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslOrganismDbipatchworkpillarpkgconfigplogrplyrpngprettyunitsprogressProtGenericspurrrqvalueR6rappdirsRBGLRColorBrewerRcppRCurlreshape2restfulrRhtslibrjsonrlangrmarkdownrngtoolsrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextxdbmakerUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLxml2XVectoryamlzlibbioc

Introduction to derfinderPlot

Rendered fromderfinderPlot.Rmdusingknitr::rmarkdownon Jan 13 2025.

Last update: 2024-12-12
Started: 2014-09-24