Package: derfinderPlot 1.39.0
derfinderPlot: Plotting functions for derfinder
This package provides plotting functions for results from the derfinder package. This helps separate the graphical dependencies required for making these plots from the core functionality of derfinder.
Authors:
derfinderPlot_1.39.0.tar.gz
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derfinderPlot.pdf |derfinderPlot.html✨
derfinderPlot/json (API)
NEWS
# Install 'derfinderPlot' in R: |
install.packages('derfinderPlot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leekgroup/derfinderplot/issues
On BioConductor:derfinderPlot-1.39.0(bioc 3.20)derfinderPlot-1.38.0(bioc 3.19)
Last updated 2 months agofrom:6406f0e33c
Exports:plotClusterplotOverviewplotRegionCoveragevennRegions
Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobbroombroom.helpersBSgenomebslibbumphuntercachemcheckmateclicliprclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdbplyrDelayedArrayderfinderderfinderHelperdichromatdigestdoRNGdplyrensembldbevaluatefansifarverfastmapfilelockfontawesomeforcatsforeachforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicFilesGenomicRangesGGallyggbioggplot2ggstatsgluegraphgridExtragtablehavenhighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2IRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglabelledlambda.rlatticelazyevallifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslOrganismDbipatchworkpillarpkgconfigplogrplyrpngprettyunitsprogressProtGenericspurrrqvalueR6rappdirsRBGLRColorBrewerRcppRCurlreadrreshape2restfulrRhtslibrjsonrlangrmarkdownrngtoolsrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextxdbmakertzdbUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitevroomwithrxfunXMLxml2XVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Plot the coverage information surrounding a region cluster | plotCluster |
Plot a karyotype overview of the genome with the identified regions | plotOverview |
Makes plots for every region while summarizing the annotation | plotRegionCoverage |
Venn diagram for annotated regions given the genomic state | vennRegions |