Package: dcanr 1.23.0
Dharmesh D. Bhuva
dcanr: Differential co-expression/association network analysis
This package implements methods and an evaluation framework to infer differential co-expression/association networks. Various methods are implemented and can be evaluated using simulated datasets. Inference of differential co-expression networks can allow identification of networks that are altered between two conditions (e.g., health and disease).
Authors:
dcanr_1.23.0.tar.gz
dcanr_1.23.0.zip(r-4.5)dcanr_1.23.0.zip(r-4.4)dcanr_1.23.0.zip(r-4.3)
dcanr_1.23.0.tgz(r-4.5-any)dcanr_1.23.0.tgz(r-4.4-any)dcanr_1.23.0.tgz(r-4.3-any)
dcanr_1.23.0.tar.gz(r-4.5-noble)dcanr_1.23.0.tar.gz(r-4.4-noble)
dcanr_1.23.0.tgz(r-4.4-emscripten)dcanr_1.23.0.tgz(r-4.3-emscripten)
dcanr.pdf |dcanr.html✨
dcanr/json (API)
NEWS
| # Install 'dcanr' in R: |
| install.packages('dcanr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/davislaboratory/dcanr/issues
Pkgdown site:https://davislaboratory.github.io
- sim102 - Simulated expression data with knock-outs
On BioConductor:dcanr-1.23.0(bioc 3.21)dcanr-1.22.0(bioc 3.20)
networkinferencegraphandnetworkdifferentialexpressionnetwork
Last updated 4 months agofrom:1a99f0d8be. Checks:1 OK, 6 NOTE, 1 ERROR. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 06 2025 |
| R-4.5-win | NOTE | Feb 06 2025 |
| R-4.5-mac | ERROR | Feb 06 2025 |
| R-4.5-linux | NOTE | Feb 06 2025 |
| R-4.4-win | NOTE | Feb 06 2025 |
| R-4.4-mac | NOTE | Feb 06 2025 |
| R-4.3-win | NOTE | Feb 06 2025 |
| R-4.3-mac | NOTE | Feb 06 2025 |
Exports:cor.pairsdcAdjustdcEvaluatedcMethodsdcNetworkdcPipelinedcScoredcTestdcZscoregetConditionNamesgetSimDatagetTrueNetworkmi.apperfMethodsperformanceMeasureplotSimNetwork
Dependencies:circlizeclicodetoolscolorspacecpp11digestdoRNGforeachGlobalOptionsglueigraphiteratorslatticelifecyclemagrittrMatrixpkgconfigplyrRColorBrewerRcppreshape2rlangrngtoolsshapestringistringrvctrs
Performing differential co-expression analysis using dcanr
Rendered fromdcanr_vignette.Rmdusingknitr::rmarkdownon Feb 06 2025.Last update: 2019-04-18
Started: 2018-10-05
Evaluating differential co-expression methods using dcanr
Rendered fromdcanr_evaluation_vignette.Rmdusingknitr::rmarkdownon Feb 06 2025.Last update: 2019-08-06
Started: 2018-10-05
