Package: cydar 1.29.0
cydar: Using Mass Cytometry for Differential Abundance Analyses
Identifies differentially abundant populations between samples and groups in mass cytometry data. Provides methods for counting cells into hyperspheres, controlling the spatial false discovery rate, and visualizing changes in abundance in the high-dimensional marker space.
Authors:
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cydar.pdf |cydar.html✨
cydar/json (API)
NEWS
# Install 'cydar' in R: |
install.packages('cydar', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:cydar-1.29.0(bioc 3.20)cydar-1.28.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:bb6c3e1e62
Exports:cbindcellAssignmentscellInformationcellIntensitiescountCellscreateColorBardnaGateexpandRadiusfindFirstSpheregetCenterCellintensitiesintensityRangesinterpretSphereslabelSpheresmarkernamesmedIntensitiesmultiIntHistneighborDistancesnormalizeBatchoutlierGatepickBestMarkersplotSphereIntensityplotSphereLogFCpoolCellsprepareCellDatashowspatialFDR
Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsBiocNeighborsBiocParallelbslibcachemclicodetoolscolorspacecommonmarkcpp11crayoncurlcytolibDelayedArraydigestfansifarverfastmapflowCorefontawesomeformatRfsfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegridExtragtablehtmltoolshttpuvhttrIRangesisobandjquerylibjsonlitelabelinglambda.rlaterlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigpromisesR6rappdirsRColorBrewerRcppRcppHNSWRhdf5librlangRProtoBufLibS4ArraysS4VectorssassscalesshinySingleCellExperimentsnowsourcetoolsSparseArraySummarizedExperimentsystibbleUCSC.utilsutf8vctrsviridisviridisLitewithrxtableXVectorzlibbioc