Package: cycle 1.67.0

Matthias Futschik
cycle: Significance of periodic expression pattern in time-series data
Package for assessing the statistical significance of periodic expression based on Fourier analysis and comparison with data generated by different background models
Authors:
cycle_1.67.0.tar.gz
cycle_1.67.0.zip(r-4.7)cycle_1.67.0.zip(r-4.6)cycle_1.67.0.zip(r-4.5)
cycle_1.67.0.tgz(r-4.6-any)cycle_1.67.0.tgz(r-4.5-any)
cycle_1.67.0.tar.gz(r-4.7-any)cycle_1.67.0.tar.gz(r-4.6-any)
cycle_1.67.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
cycle/json (API)
| # Install 'cycle' in R: |
| install.packages('cycle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:cycle-1.67.0(bioc 3.24)cycle-1.66.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:918dde818d. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 130 | ||
| linux-devel-x86_64 | NOTE | 111 | ||
| source / vignettes | OK | 171 | ||
| linux-release-x86_64 | NOTE | 127 | ||
| macos-release-arm64 | NOTE | 108 | ||
| macos-oldrel-arm64 | NOTE | 116 | ||
| windows-devel | NOTE | 81 | ||
| windows-release | NOTE | 78 | ||
| windows-oldrel | NOTE | 74 | ||
| wasm-release | OK | 115 |
Exports:ar1analysisbackgroundDatafdrfourierfourierscore
Dependencies:BiobaseBiocGenericsclassDynDoce1071genericsMASSMfuzzproxytkWidgetswidgetTools
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Performs AR1 fitting | ar1analysis |
| Generation of background expression set | backgroundData |
| Calculation of the false discovery rates (FDR) for periodic expression | fdrfourier |
| Calculation of the Fourier score | fourierscore |