Package: ctsGE 1.39.0

Michal Sharabi-Schwager

ctsGE: Clustering of Time Series Gene Expression data

Methodology for supervised clustering of potentially many predictor variables, such as genes etc., in time series datasets Provides functions that help the user assigning genes to predefined set of model profiles.

Authors:Michal Sharabi-Schwager [aut, cre], Ron Ophir [aut]

ctsGE_1.39.0.tar.gz
ctsGE_1.39.0.zip(r-4.7)ctsGE_1.39.0.zip(r-4.6)ctsGE_1.39.0.zip(r-4.5)
ctsGE_1.39.0.tgz(r-4.6-any)ctsGE_1.39.0.tgz(r-4.5-any)
ctsGE_1.39.0.tar.gz(r-4.7-any)ctsGE_1.39.0.tar.gz(r-4.6-any)
ctsGE_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ctsGE/json (API)

# Install 'ctsGE' in R:

install.packages('ctsGE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/michalsharabi/ctsge/issues

On BioConductor:ctsGE-1.39.0(bioc 3.24)ctsGE-1.38.0(bioc 3.23)

immunooncology geneexpression transcription differentialexpression genesetenrichment genetics bayesian clustering timecourse sequencing rnaseq

4.00 score 1 stars 3 scripts 377 downloads 1 mentions 6 exports 53 dependencies

Last updated from:61143f9f76. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	196
linux-devel-x86_64	NOTE	259
source / vignettes	OK	236
linux-release-x86_64	NOTE	241
macos-release-arm64	NOTE	97
macos-oldrel-arm64	NOTE	123
windows-devel	NOTE	118
windows-release	NOTE	160
windows-oldrel	NOTE	124
wasm-release	OK	134

Exports:ClustIndexes ctsGEShinyApp index PlotIndexesClust PreparingTheIndexes readTSGE

Dependencies:base64enc bslib cachem ccaPP cli commonmark cpp11 DEoptimR digest farver fastmap fontawesome fs ggplot2 glue gtable htmltools httpuv isoband jquerylib jsonlite labeling later lifecycle limma magrittr memoise mime mvtnorm otel pcaPP plyr promises R6 rappdirs RColorBrewer Rcpp RcppArmadillo reshape2 rlang robustbase S7 sass scales shiny sourcetools statmod stringi stringr vctrs viridisLite withr xtable

ctsGE Package

Michal Sharabi-Schwager, Ron Ophir

Rendered fromctsGE.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2018-08-30
Started: 2016-07-19

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Clustering the indexes applying K-means	ClustIndexes
GUI for interactive exploration of gene expression data.	ctsGEShinyApp
Indexing function	index
Graphic visualization of an index	PlotIndexesClust
Define an expression index for each gene	PreparingTheIndexes
Read and merge a set of files containing gene expression data	readTSGE