Package: crisprViz 1.15.0

Jean-Philippe Fortin

crisprViz: Visualization Functions for CRISPR gRNAs

Provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework.

Authors:Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]

crisprViz_1.15.0.tar.gz
crisprViz_1.15.0.zip(r-4.7)crisprViz_1.15.0.zip(r-4.6)crisprViz_1.15.0.zip(r-4.5)
crisprViz_1.15.0.tgz(r-4.6-any)crisprViz_1.15.0.tgz(r-4.5-any)
crisprViz_1.15.0.tar.gz(r-4.7-any)crisprViz_1.15.0.tar.gz(r-4.6-any)
crisprViz_1.15.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
crisprViz/json (API)
NEWS

# Install 'crisprViz' in R:
install.packages('crisprViz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprviz/issues

Datasets:
  • cage - CAGE peak annotation from AnnotationHub
  • cas12aGuideSet - Example GuideSet targeting the human LTN1 gene.
  • cas9GuideSet - Example GuideSet targeting the human LTN1 gene.
  • dnase - DNase I hypersensitive site annotation from AnnotationHub
  • gpr21GeneModel - CompressedGRangesList describing the human GPR21 gene.
  • gpr21GuideSet - Example GuideSet targeting the human GPR21 gene.
  • krasGeneModel - CompressedGRangesList describing the human KRAS gene.
  • krasGuideSet - Example GuideSet targeting the human KRAS gene.
  • ltn1GeneModel - CompressedGRangesList describing the human LTN1 gene.
  • mmp7GeneModel - CompressedGRangesList describing the human MMP7 gene.
  • mmp7GuideSet - Example GuideSet targeting the human MMP7 gene.
  • repeats - Subset of repeat elements for hg38.

On BioConductor:crisprViz-1.15.0(bioc 3.24)crisprViz-1.14.0(bioc 3.23)

crisprfunctionalgenomicsgenetargetbioconductorbioconductor-packagecrispr-analysiscrispr-designgrnagrna-sequencegrna-sequencessgrnasgrna-designvisualization

6.30 score 8 stars 2 packages 14 scripts 401 downloads 2 exports 163 dependencies

Last updated from:b07c04d61c. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE332
linux-devel-x86_64NOTE723
source / vignettesOK450
linux-release-x86_64NOTE619
macos-release-arm64NOTE435
macos-oldrel-arm64NOTE390
windows-develNOTE512
windows-releaseNOTE461
windows-oldrelNOTE537
wasm-releaseOK258

Exports:plotGuideSetplotMultipleGuideSets

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarilloclicliprclustercodetoolscolorspacecpp11crayoncrisprBasecrisprBowtiecrisprDesigncrisprScorecrisprScoreDatacurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrensembldbevaluateExperimentHubfarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtableGvizherehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslpillarpkgconfigpngprettyunitsprogressProtGenericspurrrR6randomForestrappdirsRbowtieRColorBrewerRcppRcppEigenRcppTOMLRCurlreadrrestfulrreticulateRhtslibrjsonrlangrmarkdownrpartrprojrootRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextxdbmakertzdbUCSC.utilsutf8VariantAnnotationvctrsviridisLitevroomwithrxfunXMLxml2XVectoryaml

Introduction to crisprViz

Luke Hoberecht

Rendered fromintro.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2022-10-17
Started: 2022-07-18