Package: crisprVerse 1.7.0

Jean-Philippe Fortin

crisprVerse: Easily install and load the crisprVerse ecosystem for CRISPR gRNA design

The crisprVerse is a modular ecosystem of R packages developed for the design and manipulation of CRISPR guide RNAs (gRNAs). All packages share a common language and design principles. This package is designed to make it easy to install and load the crisprVerse packages in a single step. To learn more about the crisprVerse, visit <https://www.github.com/crisprVerse>.

Authors:Jean-Philippe Fortin [aut, cre]

crisprVerse_1.7.0.tar.gz
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crisprVerse.pdf |crisprVerse.html✨
crisprVerse/json (API)
NEWS

# Install 'crisprVerse' in R:

install.packages('crisprVerse', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprverse/issues

On BioConductor:crisprVerse-1.7.0(bioc 3.20)crisprVerse-1.6.0(bioc 3.19)

bioconductor-package

3 exports 0.36 score 171 dependencies

Last updated 2 months agofrom:2cac05e153

Exports:crisprVerse_deps crisprVerse_packages crisprVerse_update

Dependencies:abind AnnotationDbi AnnotationFilter AnnotationHub askpass backports base64enc basilisk basilisk.utils BH Biobase BiocFileCache BiocGenerics BiocIO BiocManager BiocParallel BiocVersion biomaRt Biostrings biovizBase bit bit64 bitops blob BSgenome bslib cachem checkmate cli clipr cluster codetools colorspace cpp11 crayon crisprBase crisprBowtie crisprDesign crisprScore crisprScoreData crisprViz curl data.table DBI dbplyr DelayedArray deldir dichromat digest dir.expiry dplyr ensembldb evaluate ExperimentHub fansi farver fastmap filelock fontawesome foreign formatR Formula fs futile.logger futile.options generics GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 glue gridExtra gtable Gviz here highr Hmisc hms htmlTable htmltools htmlwidgets httr httr2 interp IRanges isoband jpeg jquerylib jsonlite KEGGREST knitr labeling lambda.r lattice latticeExtra lazyeval lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mgcv mime munsell nlme nnet openssl pillar pkgconfig plogr png prettyunits progress ProtGenerics purrr R6 randomForest rappdirs Rbowtie RColorBrewer Rcpp RcppEigen RcppTOML RCurl readr restfulr reticulate Rhtslib rjson rlang rmarkdown rpart rprojroot Rsamtools RSQLite rstudioapi rtracklayer S4Arrays S4Vectors sass scales snow SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex txdbmaker tzdb UCSC.utils utf8 VariantAnnotation vctrs viridis viridisLite vroom withr xfun XML xml2 XVector yaml zlibbioc

crisprVerse: ecosystem of R packages for CRISPR gRNA design

Jean-Philippe Fortin, Luke Hoberecht

Rendered fromcrisprVerse.Rmdusingknitr::rmarkdownon Jun 20 2024.

Last update: 2022-11-03
Started: 2022-07-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
List all crisprVerse dependencies	crisprVerse_deps
List all packages in the crisprVerse	crisprVerse_packages
Update crisprVerse packages	crisprVerse_update