Package: crisprVerse 1.15.0

Jean-Philippe Fortin

crisprVerse: Easily install and load the crisprVerse ecosystem for CRISPR gRNA design

The crisprVerse is a modular ecosystem of R packages developed for the design and manipulation of CRISPR guide RNAs (gRNAs). All packages share a common language and design principles. This package is designed to make it easy to install and load the crisprVerse packages in a single step. To learn more about the crisprVerse, visit <https://www.github.com/crisprVerse>.

Authors:Jean-Philippe Fortin [aut, cre]

crisprVerse_1.15.0.tar.gz
crisprVerse_1.15.0.zip(r-4.7)crisprVerse_1.15.0.zip(r-4.6)crisprVerse_1.15.0.zip(r-4.5)
crisprVerse_1.15.0.tgz(r-4.6-any)crisprVerse_1.15.0.tgz(r-4.5-any)
crisprVerse_1.15.0.tar.gz(r-4.7-any)crisprVerse_1.15.0.tar.gz(r-4.6-any)
crisprVerse_1.15.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
crisprVerse/json (API)

# Install 'crisprVerse' in R:

install.packages('crisprVerse', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprverse/issues

On BioConductor:crisprVerse-1.15.0(bioc 3.24)crisprVerse-1.14.0(bioc 3.23)

crispr functionalgenomics genetarget crispr-analysis crispr-design crispr-target grna grna-sequence grna-sequences

5.29 score 15 stars 13 scripts 344 downloads 3 exports 164 dependencies

Last updated from:ea486aaaca. Checks:1 WARNING, 5 NOTE, 2 OK, 2 ERROR. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	298
linux-devel-x86_64	NOTE	511
source / vignettes	OK	413
linux-release-x86_64	NOTE	602
macos-release-arm64	NOTE	388
macos-oldrel-arm64	ERROR	247
windows-devel	NOTE	422
windows-release	NOTE	423
windows-oldrel	ERROR	413
wasm-release	OK	211

Exports:crisprVerse_deps crisprVerse_packages crisprVerse_update

Dependencies:abind AnnotationDbi AnnotationFilter AnnotationHub askpass backports base64enc BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO BiocManager BiocParallel BiocVersion biomaRt Biostrings biovizBase bit bit64 bitops blob BSgenome bslib cachem checkmate cigarillo cli clipr cluster codetools colorspace cpp11 crayon crisprBase crisprBowtie crisprDesign crisprScore crisprScoreData crisprViz curl data.table DBI dbplyr DelayedArray deldir dichromat digest dplyr ensembldb evaluate ExperimentHub farver fastmap filelock fontawesome foreign formatR Formula fs futile.logger futile.options generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 glue gridExtra gtable Gviz here highr Hmisc hms htmlTable htmltools htmlwidgets httr httr2 interp IRanges isoband jpeg jquerylib jsonlite KEGGREST knitr labeling lambda.r lattice latticeExtra lazyeval lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mime nnet openssl pillar pkgconfig png prettyunits progress ProtGenerics purrr R6 randomForest rappdirs Rbowtie RColorBrewer Rcpp RcppEigen RcppTOML RCurl readr restfulr reticulate Rhtslib rjson rlang rmarkdown rpart rprojroot Rsamtools RSQLite rstudioapi rtracklayer S4Arrays S4Vectors S7 sass scales Seqinfo snow SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex txdbmaker tzdb UCSC.utils utf8 VariantAnnotation vctrs viridisLite vroom withr xfun XML xml2 XVector yaml

crisprVerse: ecosystem of R packages for CRISPR gRNA design

Installation and getting started | Components | Reproducibility

Rendered fromcrisprVerse.Rmdusingknitr::rmarkdown

Last update: 2022-11-03
Started: 2022-07-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
List all crisprVerse dependencies	crisprVerse_deps
List all packages in the crisprVerse	crisprVerse_packages
Update crisprVerse packages	crisprVerse_update