Package: crisprVerse 1.9.0

Jean-Philippe Fortin

crisprVerse: Easily install and load the crisprVerse ecosystem for CRISPR gRNA design

The crisprVerse is a modular ecosystem of R packages developed for the design and manipulation of CRISPR guide RNAs (gRNAs). All packages share a common language and design principles. This package is designed to make it easy to install and load the crisprVerse packages in a single step. To learn more about the crisprVerse, visit <https://www.github.com/crisprVerse>.

Authors:Jean-Philippe Fortin [aut, cre]

crisprVerse_1.9.0.tar.gz
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crisprVerse.pdf |crisprVerse.html✨
crisprVerse/json (API)
NEWS

# Install 'crisprVerse' in R:
install.packages('crisprVerse', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprverse/issues

On BioConductor:crisprVerse-1.9.0(bioc 3.21)crisprVerse-1.8.0(bioc 3.20)

crisprfunctionalgenomicsgenetargetcrispr-analysiscrispr-designcrispr-targetgrnagrna-sequencegrna-sequences

5.11 score 13 stars 8 scripts 286 downloads 3 exports 170 dependencies

Last updated 4 months agofrom:e57a5dc764. Checks:3 OK, 5 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 17 2025
R-4.5-winNOTEFeb 17 2025
R-4.5-macNOTEFeb 17 2025
R-4.5-linuxNOTEFeb 17 2025
R-4.4-winNOTEFeb 17 2025
R-4.4-macNOTEFeb 17 2025
R-4.3-winOKFeb 17 2025
R-4.3-macOKFeb 17 2025

Exports:crisprVerse_depscrisprVerse_packagescrisprVerse_update

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassbackportsbase64encbasiliskbasilisk.utilsBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmateclicliprclustercodetoolscolorspacecpp11crayoncrisprBasecrisprBowtiecrisprDesigncrisprScorecrisprScoreDatacrisprVizcurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdir.expirydplyrensembldbevaluateExperimentHubfansifarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtableGvizherehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslpillarpkgconfigplogrpngprettyunitsprogressProtGenericspurrrR6randomForestrappdirsRbowtieRColorBrewerRcppRcppEigenRcppTOMLRCurlreadrrestfulrreticulateRhtslibrjsonrlangrmarkdownrpartrprojrootRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextxdbmakertzdbUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitevroomwithrxfunXMLxml2XVectoryaml

crisprVerse: ecosystem of R packages for CRISPR gRNA design

Jean-Philippe Fortin, Luke Hoberecht

Rendered fromcrisprVerse.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2022-11-03
Started: 2022-07-25