Package: crisprShiny 1.9.0

Jean-Philippe Fortin

crisprShiny: Exploring curated CRISPR gRNAs via Shiny

Provides means to interactively visualize guide RNAs (gRNAs) in GuideSet objects via Shiny application. This GUI can be self-contained or as a module within a larger Shiny app. The content of the app reflects the annotations present in the passed GuideSet object, and includes intuitive tools to examine, filter, and export gRNAs, thereby making gRNA design more user-friendly.

Authors:Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]

crisprShiny_1.9.0.tar.gz
crisprShiny_1.9.0.zip(r-4.7)crisprShiny_1.9.0.zip(r-4.6)crisprShiny_1.9.0.zip(r-4.5)
crisprShiny_1.9.0.tgz(r-4.6-any)crisprShiny_1.9.0.tgz(r-4.5-any)
crisprShiny_1.9.0.tar.gz(r-4.7-any)crisprShiny_1.9.0.tar.gz(r-4.6-any)
crisprShiny_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
crisprShiny/json (API)
NEWS

# Install 'crisprShiny' in R:
install.packages('crisprShiny', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprshiny/issues

Datasets:
  • guideSetExample_basic - Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS
  • guideSetExample_kras - Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS
  • guideSetExample_kras_be - Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS
  • guideSetExample_ntcs - Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS and NTCs
  • tooltipAnnotation - List of tooltip annotations
  • tss_kras - Example of a 'GenomicRanges' object storing annotated TSS ranges for the human gene KRAS
  • txdb_kras - Example of a 'CompressedGenomicRangesList' object storing annotated ranges for the human gene KRAS

On BioConductor:crisprShiny-1.9.0(bioc 3.24)crisprShiny-1.8.0(bioc 3.23)

crisprfunctionalgenomicsgenetargetguicrispr-analysiscrispr-designshiny

4.82 score 2 stars 11 scripts 243 downloads 3 exports 178 dependencies

Last updated from:21f982dd4c. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE311
linux-devel-x86_64NOTE618
source / vignettesOK429
linux-release-x86_64NOTE644
macos-release-arm64NOTE631
macos-oldrel-arm64NOTE323
windows-develNOTE700
windows-releaseNOTE556
windows-oldrelNOTE555
wasm-releaseOK266

Exports:crisprServercrisprShinycrisprUI

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarilloclicliprclustercodetoolscolorspacecommonmarkcpp11crayoncrisprBasecrisprBowtiecrisprDesigncrisprScorecrisprScoreDatacrisprVizcrosstalkcurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrDTensembldbevaluateExperimentHubfarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtableGvizherehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpuvhttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslotelpillarpkgconfigpngprettyunitsprogresspromisesProtGenericspurrrpwalignR6randomForestrappdirsRbowtieRColorBrewerRcppRcppEigenRcppTOMLRCurlreadrrestfulrreticulateRhtslibrjsonrlangrmarkdownrpartrprojrootRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinyBSshinyjssnowsourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextxdbmakertzdbUCSC.utilsutf8VariantAnnotationvctrsviridisLitevroomwaiterwithrxfunXMLxml2xtableXVectoryaml

Introduction to crisprShiny

Luke Hoberecht, Jean-Philippe Fortin

Rendered fromintro.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-10-19
Started: 2023-07-26