Package: countsimQC 1.31.0

Charlotte Soneson

countsimQC: Compare Characteristic Features of Count Data Sets

countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.

Authors:Charlotte Soneson [aut, cre]

countsimQC_1.31.0.tar.gz
countsimQC_1.31.0.zip(r-4.7)countsimQC_1.31.0.zip(r-4.6)countsimQC_1.31.0.zip(r-4.5)
countsimQC_1.31.0.tgz(r-4.6-any)countsimQC_1.31.0.tgz(r-4.5-any)
countsimQC_1.31.0.tar.gz(r-4.7-any)countsimQC_1.31.0.tar.gz(r-4.6-any)
countsimQC_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
countsimQC/json (API)
NEWS

# Install 'countsimQC' in R:
install.packages('countsimQC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/csoneson/countsimqc/issues

Datasets:

On BioConductor:countsimQC-1.31.0(bioc 3.24)countsimQC-1.30.0(bioc 3.23)

microbiomernaseqsinglecellexperimentaldesignqualitycontrolreportwritingvisualizationimmunooncology

7.75 score 30 stars 25 scripts 437 downloads 6 mentions 2 exports 115 dependencies

Last updated from:7740a95a08. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE142
linux-devel-x86_64OK535
source / vignettesOK344
linux-release-x86_64OK534
macos-release-arm64OK260
macos-oldrel-arm64OK272
windows-develOK436
windows-releaseOK515
windows-oldrelOK422
wasm-releaseOK157

Exports:countsimQCReportgenerateIndividualPlots

Dependencies:abindannotateAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobbslibcachemcaToolsclicodetoolscpp11crayoncrosstalkcurlDBIDelayedArrayDESeq2digestdplyrDTedgeRevaluatefarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslotelpillarpkgconfigpngpromisespurrrR6raggrandtestsrappdirsRColorBrewerRcppRcppArmadillorlangrmarkdownRSQLiteS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsyssystemfontstextshapingtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunXMLxtableXVectoryaml

countsimQC - Comparing characteristic features across count data sets

Charlotte Soneson

Rendered fromcountsimQC.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-04-19
Started: 2017-05-15