Package: countsimQC 1.23.0
countsimQC: Compare Characteristic Features of Count Data Sets
countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.
Authors:
countsimQC_1.23.0.tar.gz
countsimQC_1.23.0.zip(r-4.5)countsimQC_1.23.0.zip(r-4.4)countsimQC_1.23.0.zip(r-4.3)
countsimQC_1.23.0.tgz(r-4.4-any)countsimQC_1.23.0.tgz(r-4.3-any)
countsimQC_1.23.0.tar.gz(r-4.5-noble)countsimQC_1.23.0.tar.gz(r-4.4-noble)
countsimQC_1.23.0.tgz(r-4.4-emscripten)countsimQC_1.23.0.tgz(r-4.3-emscripten)
countsimQC.pdf |countsimQC.html✨
countsimQC/json (API)
NEWS
# Install 'countsimQC' in R: |
install.packages('countsimQC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/csoneson/countsimqc/issues
- countsimExample - Example list with three count data sets
- countsimExample_dfmat - Example list with three count data sets in different formats
On BioConductor:countsimQC-1.23.0(bioc 3.20)countsimQC-1.22.0(bioc 3.19)
Last updated 2 months agofrom:5d1081c699
Exports:countsimQCReportgenerateIndividualPlots
Dependencies:abindannotateAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobbslibcachemcaToolsclicodetoolscolorspacecpp11crayoncrosstalkcurlDBIDelayedArrayDESeq2digestdplyrDTedgeRevaluatefansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngpromisespurrrR6raggrandtestsrappdirsRColorBrewerRcppRcppArmadillorlangrmarkdownRSQLiteS4ArraysS4VectorssassscalessnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsyssystemfontstextshapingtibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXMLxtableXVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Example list with three count data sets | countsimExample |
Example list with three count data sets in different formats | countsimExample_dfmat |
countsimQC | countsimQC-pkg |
Generate countsimQC report | countsimQCReport |
Generate individual plots from countsimQCReport output | generateIndividualPlots |