Package: countsimQC 1.25.0

Charlotte Soneson

countsimQC: Compare Characteristic Features of Count Data Sets

countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.

Authors:Charlotte Soneson [aut, cre]

countsimQC_1.25.0.tar.gz
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countsimQC.pdf |countsimQC.html✨
countsimQC/json (API)
NEWS

# Install 'countsimQC' in R:
install.packages('countsimQC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/csoneson/countsimqc/issues

Datasets:

On BioConductor:countsimQC-1.25.0(bioc 3.21)countsimQC-1.24.0(bioc 3.20)

microbiomernaseqsinglecellexperimentaldesignqualitycontrolreportwritingvisualizationimmunooncology

7.69 score 27 stars 24 scripts 454 downloads 6 mentions 2 exports 122 dependencies

Last updated 1 months agofrom:cc0eb4d83b. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 21 2025
R-4.5-winOKJan 21 2025
R-4.5-linuxOKJan 21 2025
R-4.4-winOKJan 22 2025
R-4.4-macOKJan 21 2025
R-4.3-winOKJan 21 2025
R-4.3-macOKJan 21 2025

Exports:countsimQCReportgenerateIndividualPlots

Dependencies:abindannotateAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobbslibcachemcaToolsclicodetoolscolorspacecpp11crayoncrosstalkcurlDBIDelayedArrayDESeq2digestdplyrDTedgeRevaluatefansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngpromisespurrrR6raggrandtestsrappdirsRColorBrewerRcppRcppArmadillorlangrmarkdownRSQLiteS4ArraysS4VectorssassscalessnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsyssystemfontstextshapingtibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXMLxtableXVectoryaml

countsimQC - Comparing characteristic features across count data sets

Charlotte Soneson

Rendered fromcountsimQC.Rmdusingknitr::rmarkdownon Jan 21 2025.

Last update: 2020-04-19
Started: 2017-05-15