Package: countsimQC 1.25.0

Charlotte Soneson

countsimQC: Compare Characteristic Features of Count Data Sets

countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.

Authors:Charlotte Soneson [aut, cre]

countsimQC_1.25.0.tar.gz
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countsimQC_1.25.0.tgz(r-4.4-any)countsimQC_1.25.0.tgz(r-4.3-any)
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countsimQC.pdf |countsimQC.html✨
countsimQC/json (API)
NEWS

# Install 'countsimQC' in R:
install.packages('countsimQC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/csoneson/countsimqc/issues

Datasets:

On BioConductor:countsimQC-1.25.0(bioc 3.21)countsimQC-1.24.0(bioc 3.20)

microbiomernaseqsinglecellexperimentaldesignqualitycontrolreportwritingvisualizationimmunooncology

7.59 score 27 stars 24 scripts 454 downloads 6 mentions 2 exports 123 dependencies

Last updated 18 days agofrom:cb456012a9. Checks:OK: 3 WARNING: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 03 2024
R-4.5-winWARNINGNov 03 2024
R-4.5-linuxWARNINGNov 03 2024
R-4.4-winWARNINGNov 03 2024
R-4.4-macOKNov 03 2024
R-4.3-winWARNINGNov 03 2024
R-4.3-macOKNov 03 2024

Exports:countsimQCReportgenerateIndividualPlots

Dependencies:abindannotateAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobbslibcachemcaToolsclicodetoolscolorspacecpp11crayoncrosstalkcurlDBIDelayedArrayDESeq2digestdplyrDTedgeRevaluatefansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngpromisespurrrR6raggrandtestsrappdirsRColorBrewerRcppRcppArmadillorlangrmarkdownRSQLiteS4ArraysS4VectorssassscalessnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsyssystemfontstextshapingtibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXMLxtableXVectoryamlzlibbioc

countsimQC - Comparing characteristic features across count data sets

Charlotte Soneson

Rendered fromcountsimQC.Rmdusingknitr::rmarkdownon Nov 03 2024.

Last update: 2020-04-19
Started: 2017-05-15