Package: copa 1.75.0

James W. MacDonald

copa: Functions to perform cancer outlier profile analysis.

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Authors:James W. MacDonald

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copa.pdf |copa.html✨
copa/json (API)

# Install 'copa' in R:
install.packages('copa', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:copa-1.75.0(bioc 3.21)copa-1.74.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

onechanneltwochanneldifferentialexpressionvisualization

3.60 score 2 scripts 302 downloads 2 mentions 6 exports 3 dependencies

Last updated 2 months agofrom:64ecbf8590. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 03 2024
R-4.5-win-x86_64NOTEDec 03 2024
R-4.5-linux-x86_64NOTEDec 03 2024
R-4.4-win-x86_64NOTEDec 03 2024
R-4.4-mac-x86_64NOTEDec 03 2024
R-4.4-mac-aarch64NOTEDec 03 2024
R-4.3-win-x86_64NOTEDec 03 2024
R-4.3-mac-x86_64NOTEDec 03 2024
R-4.3-mac-aarch64NOTEDec 03 2024

Exports:copacopaPermplotCopascatterPlotCopasummaryCopatableCopa

Dependencies:BiobaseBiocGenericsgenerics

copa Overview

Rendered fromcopa.Rnwusingutils::Sweaveon Dec 03 2024.

Last update: 2013-10-21
Started: 2013-10-21