Package: copa 1.75.0

James W. MacDonald

copa: Functions to perform cancer outlier profile analysis.

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Authors:James W. MacDonald

copa_1.75.0.tar.gz
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copa.pdf |copa.html
copa/json (API)

# Install 'copa' in R:
install.packages('copa', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:copa-1.75.0(bioc 3.21)copa-1.74.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

onechanneltwochanneldifferentialexpressionvisualization

3.60 score 2 scripts 302 downloads 2 mentions 6 exports 3 dependencies

Last updated 3 months agofrom:64ecbf8590. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 02 2025
R-4.5-win-x86_64NOTEJan 02 2025
R-4.5-linux-x86_64NOTEJan 02 2025
R-4.4-win-x86_64NOTEJan 02 2025
R-4.4-mac-x86_64NOTEJan 02 2025
R-4.4-mac-aarch64NOTEJan 02 2025
R-4.3-win-x86_64NOTEJan 02 2025
R-4.3-mac-x86_64NOTEJan 02 2025
R-4.3-mac-aarch64NOTEJan 02 2025

Exports:copacopaPermplotCopascatterPlotCopasummaryCopatableCopa

Dependencies:BiobaseBiocGenericsgenerics

copa Overview

Rendered fromcopa.Rnwusingutils::Sweaveon Jan 02 2025.

Last update: 2013-10-21
Started: 2013-10-21