Package: consensus 1.31.0
Tim Peters
consensus: Cross-platform consensus analysis of genomic measurements via interlaboratory testing method
An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.
Authors:
consensus_1.31.0.tar.gz
consensus_1.31.0.zip(r-4.7)consensus_1.31.0.zip(r-4.6)consensus_1.31.0.zip(r-4.5)
consensus_1.31.0.tgz(r-4.6-any)consensus_1.31.0.tgz(r-4.5-any)
consensus_1.31.0.tar.gz(r-4.7-any)consensus_1.31.0.tar.gz(r-4.6-any)
consensus_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
consensus/json (API)
NEWS
| # Install 'consensus' in R: |
| install.packages('consensus', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:consensus-1.31.0(bioc 3.24)consensus-1.30.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
qualitycontrolregressiondatarepresentationgeneexpressionmicroarrayrnaseq
Last updated from:98fe0b0339. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 135 | ||
| linux-devel-x86_64 | NOTE | 133 | ||
| source / vignettes | OK | 165 | ||
| linux-release-x86_64 | NOTE | 168 | ||
| macos-release-arm64 | NOTE | 100 | ||
| macos-oldrel-arm64 | NOTE | 74 | ||
| windows-devel | NOTE | 75 | ||
| windows-release | NOTE | 75 | ||
| windows-oldrel | NOTE | 80 | ||
| wasm-release | OK | 94 |
Exports:fitConsensusMultiMeasureplotMarginalsplotMostDiscordantplotOneFit
Dependencies:bitopscaToolsgplotsgtoolsKernSmoothmatrixStatsRColorBrewer
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Cross-platform consensus analysis of genomic measurements via interlaboratory testing method | consensus-package consensus |
| Agilent microarray gene expression data | Agilent |
| Row-linear fit from multiple platforms/conditions - class | ConsensusFit-class |
| Fit row-linear models to all loci | fitConsensus |
| Affymetrix Huex gene expression data | Huex |
| MultiMeasure Constructor | MultiMeasure |
| Multi-platform genomic measurements across the same samples - class | MultiMeasure-class |
| Density plots of per-platform marginal distributions | plotMarginals |
| Plot a heatmap showing a selection of loci | plotMostDiscordant |
| Plot a single row-linear fit from a genomic locus | plotOneFit |
| RNA-Seq gene expression data | RNASeq |
| Affymetrix U133A gene expression data | U133A |
