Package: consensus 1.25.0
Tim Peters
consensus: Cross-platform consensus analysis of genomic measurements via interlaboratory testing method
An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.
Authors:
consensus_1.25.0.tar.gz
consensus_1.25.0.zip(r-4.5)consensus_1.25.0.zip(r-4.4)consensus_1.25.0.zip(r-4.3)
consensus_1.25.0.tgz(r-4.4-any)consensus_1.25.0.tgz(r-4.3-any)
consensus_1.25.0.tar.gz(r-4.5-noble)consensus_1.25.0.tar.gz(r-4.4-noble)
consensus_1.25.0.tgz(r-4.4-emscripten)consensus_1.25.0.tgz(r-4.3-emscripten)
consensus.pdf |consensus.html✨
consensus/json (API)
NEWS
| # Install 'consensus' in R: |
| install.packages('consensus', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:consensus-1.23.0(bioc 3.20)consensus-1.22.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
qualitycontrolregressiondatarepresentationgeneexpressionmicroarrayrnaseq
Last updated 23 days agofrom:c612c54fea. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 30 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 30 2024 |
| R-4.4-mac | NOTE | Oct 30 2024 |
| R-4.3-win | OK | Oct 30 2024 |
| R-4.3-mac | OK | Oct 30 2024 |
Exports:fitConsensusMultiMeasureplotMarginalsplotMostDiscordantplotOneFit
Dependencies:bitopscaToolsgplotsgtoolsKernSmoothmatrixStatsRColorBrewer
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Cross-platform consensus analysis of genomic measurements via interlaboratory testing method | consensus-package consensus |
| Agilent microarray gene expression data | Agilent |
| Row-linear fit from multiple platforms/conditions - class | ConsensusFit-class |
| Fit row-linear models to all loci | fitConsensus |
| Affymetrix Huex gene expression data | Huex |
| MultiMeasure Constructor | MultiMeasure |
| Multi-platform genomic measurements across the same samples - class | MultiMeasure-class |
| Density plots of per-platform marginal distributions | plotMarginals |
| Plot a heatmap showing a selection of loci | plotMostDiscordant |
| Plot a single row-linear fit from a genomic locus | plotOneFit |
| RNA-Seq gene expression data | RNASeq |
| Affymetrix U133A gene expression data | U133A |
