Package: consICA 2.11.0

Petr V. Nazarov

consICA: consensus Independent Component Analysis

consICA implements a data-driven deconvolution method – consensus independent component analysis (ICA) to decompose heterogeneous omics data and extract features suitable for patient diagnostics and prognostics. The method separates biologically relevant transcriptional signals from technical effects and provides information about the cellular composition and biological processes. The implementation of parallel computing in the package ensures efficient analysis of modern multicore systems.

Authors:Petr V. Nazarov [aut, cre], Tony Kaoma [aut], Maryna Chepeleva [aut]

consICA_2.11.0.tar.gz
consICA_2.11.0.zip(r-4.7)consICA_2.11.0.zip(r-4.6)consICA_2.11.0.zip(r-4.5)
consICA_2.11.0.tgz(r-4.6-any)consICA_2.11.0.tgz(r-4.5-any)
consICA_2.11.0.tar.gz(r-4.7-any)consICA_2.11.0.tar.gz(r-4.6-any)
consICA_2.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
consICA/json (API)
NEWS

# Install 'consICA' in R:
install.packages('consICA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/biomod-lih/consica/issues

Datasets:

On BioConductor:consICA-2.11.0(bioc 3.24)consICA-2.10.0(bioc 3.23)

technologystatisticalmethodsequencingrnaseqtranscriptomicsclassificationfeatureextraction

4.70 score 2 scripts 274 downloads 13 exports 77 dependencies

Last updated from:6e95b58cc9. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE251
linux-devel-x86_64NOTE490
source / vignettesOK354
linux-release-x86_64NOTE446
macos-release-arm64NOTE307
macos-oldrel-arm64NOTE212
windows-develNOTE395
windows-releaseNOTE412
windows-oldrelNOTE373
wasm-releaseOK205

Exports:anovaICconsICAestimateVarianceExplainedgetFeaturesgetGOis.consICAoneICAoverlapGOplotICVarianceExplainedsaveReportsetOrientationsortDataFramesurvivalAnalysis

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArrayfarverfastICAfastmapformatRfutile.loggerfutile.optionsgenericsGenomicRangesggplot2glueGO.dbgraphgtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslorg.Hs.eg.dbpheatmappkgconfigpngR6RColorBrewerRcppRcppArmadilloRcppParallelRfastrlangRSQLiteS4ArraysS4VectorsS7scalesSeqinfosmsnowSparseArraySparseMSummarizedExperimentsurvivalsystopGOvctrsviridisLitewithrXVectorzigg

The consICa package: User’s manual

Petr V. Nazarov, Tony Kaoma, Maryna Chepeleva

Rendered fromConsICA.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-09-18
Started: 2022-04-01