Package: consICA 2.5.0

Petr V. Nazarov

consICA: consensus Independent Component Analysis

consICA implements a data-driven deconvolution method – consensus independent component analysis (ICA) to decompose heterogeneous omics data and extract features suitable for patient diagnostics and prognostics. The method separates biologically relevant transcriptional signals from technical effects and provides information about the cellular composition and biological processes. The implementation of parallel computing in the package ensures efficient analysis of modern multicore systems.

Authors:Petr V. Nazarov [aut, cre], Tony Kaoma [aut], Maryna Chepeleva [aut]

consICA_2.5.0.tar.gz
consICA_2.5.0.zip(r-4.5)consICA_2.5.0.zip(r-4.4)consICA_2.5.0.zip(r-4.3)
consICA_2.5.0.tgz(r-4.5-any)consICA_2.5.0.tgz(r-4.4-any)consICA_2.5.0.tgz(r-4.3-any)
consICA_2.5.0.tar.gz(r-4.5-noble)consICA_2.5.0.tar.gz(r-4.4-noble)
consICA_2.5.0.tgz(r-4.4-emscripten)consICA_2.5.0.tgz(r-4.3-emscripten)
consICA.pdf |consICA.html✨
consICA/json (API)
NEWS

# Install 'consICA' in R:
install.packages('consICA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/biomod-lih/consica/issues

Datasets:

On BioConductor:consICA-2.5.0(bioc 3.21)consICA-2.4.0(bioc 3.20)

technologystatisticalmethodsequencingrnaseqtranscriptomicsclassificationfeatureextraction

4.30 score 2 scripts 337 downloads 13 exports 89 dependencies

Last updated 5 months agofrom:7b9bffed12. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winNOTEMar 29 2025
R-4.5-macNOTEMar 29 2025
R-4.5-linuxNOTEMar 29 2025
R-4.4-winNOTEMar 29 2025
R-4.4-macNOTEMar 29 2025
R-4.4-linuxNOTEMar 29 2025
R-4.3-winNOTEMar 29 2025
R-4.3-macNOTEMar 29 2025

Exports:anovaICconsICAestimateVarianceExplainedgetFeaturesgetGOis.consICAoneICAoverlapGOplotICVarianceExplainedsaveReportsetOrientationsortDataFramesurvivalAnalysis

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscolorspacecpp11crayoncurlDBIDelayedArrayfansifarverfastICAfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2glueGO.dbgraphgtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslorg.Hs.eg.dbpheatmappillarpkgconfigplogrpngR6RColorBrewerRcppRcppArmadilloRcppParallelRfastrlangRSQLiteS4ArraysS4VectorsscalessmsnowSparseArraySparseMSummarizedExperimentsurvivalsystibbletopGOUCSC.utilsutf8vctrsviridisLitewithrXVectorzigg

The consICa package: User’s manual

Petr V. Nazarov, Tony Kaoma, Maryna Chepeleva

Rendered fromConsICA.Rmdusingknitr::rmarkdownon Mar 29 2025.

Last update: 2023-09-18
Started: 2022-04-01