Package: clst 1.61.0

Noah Hoffman

clst: Classification by local similarity threshold

Package for modified nearest-neighbor classification based on calculation of a similarity threshold distinguishing within-group from between-group comparisons.

Authors:Noah Hoffman

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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
clst/json (API)

# Install 'clst' in R:

install.packages('clst', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

actino - Actinomyces data set
bvseqs - BV reference set.
strep - Streptococcus data set.

On BioConductor:clst-1.61.0(bioc 3.24)clst-1.60.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

classification

3.78 score 1 packages 10 scripts 11 exports 7 dependencies

Last updated from:7a1f4ef3de. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	137
linux-devel-x86_64	WARNING	137
source / vignettes	OK	225
linux-release-x86_64	WARNING	140
macos-release-arm64	WARNING	105
macos-oldrel-arm64	WARNING	107
windows-devel	WARNING	68
windows-release	WARNING	75
windows-oldrel	WARNING	75
wasm-release	OK	93

Exports:classifier classify classifyIter findThreshold partition plotDistances plotMutinfo printClst pull pullTab scaleDistPlot

Dependencies:evaluate highr knitr lattice ROC xfun yaml

clst

Introduction | Iris example

Rendered fromclstDemo.Rnwusingutils::Sweave

Last update: 2019-12-23
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Classification by local similarity threshold	clst-package clst
Actinomyces data set	actino
BV reference set.	bvseqs
classify	classifier classify classifyIter pull pullTab
findThreshold	findThreshold partition
Visualize results of 'link{findThreshold}'	plotDistances plotMutinfo
Print a summary of the classifier output.	printClst
Annotated multidimensional scaling plots.	scaleDistPlot
Streptococcus data set.	strep