Package: clst 1.53.0

Noah Hoffman

clst: Classification by local similarity threshold

Package for modified nearest-neighbor classification based on calculation of a similarity threshold distinguishing within-group from between-group comparisons.

Authors:Noah Hoffman

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clst.pdf |clst.html✨
clst/json (API)

# Install 'clst' in R:

install.packages('clst', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

actino - Actinomyces data set
bvseqs - BV reference set.
strep - Streptococcus data set.

On BioConductor:clst-1.53.0(bioc 3.20)clst-1.52.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

11 exports 1.00 score 7 dependencies 1 dependents

Last updated 2 months agofrom:d898425560

Exports:classifier classify classifyIter findThreshold partition plotDistances plotMutinfo printClst pull pullTab scaleDistPlot

Dependencies:evaluate highr knitr lattice ROC xfun yaml

clst

Rendered fromclstDemo.Rnwusingutils::Sweaveon Jun 20 2024.

Last update: 2019-12-23
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Classification by local similarity threshold	clst-package clst
Actinomyces data set	actino
BV reference set.	bvseqs
classify	classifier classify classifyIter pull pullTab
findThreshold	findThreshold partition
Visualize results of 'link{findThreshold}'	plotDistances plotMutinfo
Print a summary of the classifier output.	printClst
Annotated multidimensional scaling plots.	scaleDistPlot
Streptococcus data set.	strep