Package: cliProfiler 1.13.0

You Zhou

cliProfiler: A package for the CLIP data visualization

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Authors:You Zhou [aut, cre], Kathi Zarnack [aut]

cliProfiler_1.13.0.tar.gz
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cliProfiler_1.13.0.tgz(r-4.4-any)cliProfiler_1.13.0.tgz(r-4.3-any)
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cliProfiler.pdf |cliProfiler.html✨
cliProfiler/json (API)
NEWS

# Install 'cliProfiler' in R:
install.packages('cliProfiler', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/codezy99/cliprofiler/issues

On BioConductor:cliProfiler-1.13.0(bioc 3.21)cliProfiler-1.12.0(bioc 3.20)

sequencingchipseqvisualizationepigeneticsgenetics

4.28 score 19 scripts 126 downloads 7 exports 78 dependencies

Last updated 2 months agofrom:bbef029196. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winOKNov 29 2024
R-4.5-linuxOKNov 29 2024
R-4.4-winOKNov 29 2024
R-4.4-macOKNov 29 2024
R-4.3-winOKNov 29 2024
R-4.3-macOKNov 29 2024

Exports:exonProfilegeneTypeProfileintronProfilemetaGeneProfilemotifProfilespliceSiteProfilewindowProfile

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomeclicodetoolscolorspacecpp11crayoncurlDelayedArraydplyrfansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalessnowSparseArraySummarizedExperimentsystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryamlzlibbioc

cliProfiler Vignettes

You Zhou, Kathi Zarnack

Rendered fromcliProfilerIntroduction.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2021-10-13
Started: 2021-06-16