Package: cliProfiler 1.13.0

You Zhou

cliProfiler: A package for the CLIP data visualization

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Authors:You Zhou [aut, cre], Kathi Zarnack [aut]

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cliProfiler.pdf |cliProfiler.html✨
cliProfiler/json (API)
NEWS

# Install 'cliProfiler' in R:
install.packages('cliProfiler', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/codezy99/cliprofiler/issues

On BioConductor:cliProfiler-1.13.0(bioc 3.21)cliProfiler-1.12.0(bioc 3.20)

sequencingchipseqvisualizationepigeneticsgenetics

4.28 score 19 scripts 167 downloads 7 exports 77 dependencies

Last updated 4 months agofrom:bbef029196. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winOKJan 28 2025
R-4.5-macOKJan 28 2025
R-4.5-linuxOKJan 28 2025
R-4.4-winOKJan 28 2025
R-4.4-macOKJan 28 2025
R-4.3-winOKJan 28 2025
R-4.3-macOKJan 28 2025

Exports:exonProfilegeneTypeProfileintronProfilemetaGeneProfilemotifProfilespliceSiteProfilewindowProfile

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomeclicodetoolscolorspacecpp11crayoncurlDelayedArraydplyrfansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalessnowSparseArraySummarizedExperimentsystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryaml

cliProfiler Vignettes

You Zhou, Kathi Zarnack

Rendered fromcliProfilerIntroduction.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2021-10-13
Started: 2021-06-16