Package: cliProfiler 1.19.0

You Zhou

cliProfiler: A package for the CLIP data visualization

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Authors:You Zhou [aut, cre], Kathi Zarnack [aut]

cliProfiler_1.19.0.tar.gz
cliProfiler_1.19.0.zip(r-4.7)cliProfiler_1.19.0.zip(r-4.6)cliProfiler_1.19.0.zip(r-4.5)
cliProfiler_1.19.0.tgz(r-4.6-any)cliProfiler_1.19.0.tgz(r-4.5-any)
cliProfiler_1.19.0.tar.gz(r-4.7-any)cliProfiler_1.19.0.tar.gz(r-4.6-any)
cliProfiler_1.19.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
cliProfiler/json (API)

# Install 'cliProfiler' in R:

install.packages('cliProfiler', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/codezy99/cliprofiler/issues

On BioConductor:cliProfiler-1.19.0(bioc 3.24)cliProfiler-1.18.0(bioc 3.23)

sequencing chipseq visualization epigenetics genetics

4.26 score 18 scripts 7 exports 72 dependencies

Last updated from:6ac0d99c28. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	248
linux-devel-x86_64	OK	426
source / vignettes	OK	308
linux-release-x86_64	OK	450
macos-release-arm64	OK	229
macos-oldrel-arm64	OK	316
windows-devel	OK	335
windows-release	OK	330
windows-oldrel	OK	324
wasm-release	OK	185

Exports:exonProfile geneTypeProfile intronProfile metaGeneProfile motifProfile spliceSiteProfile windowProfile

Dependencies:abind askpass BH Biobase BiocBaseUtils BiocGenerics BiocIO BiocParallel Biostrings bitops BSgenome cigarillo cli codetools cpp11 crayon curl DelayedArray dplyr farver formatR futile.logger futile.options generics GenomicAlignments GenomicRanges ggplot2 glue gtable httr IRanges isoband jsonlite labeling lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats mime openssl pillar pkgconfig R6 RColorBrewer RCurl restfulr Rhtslib rjson rlang Rsamtools rtracklayer S4Arrays S4Vectors S7 scales Seqinfo snow SparseArray SummarizedExperiment sys tibble tidyselect utf8 vctrs viridisLite withr XML XVector yaml

cliProfiler Vignettes

Rendered fromcliProfilerIntroduction.Rmdusingknitr::rmarkdown

Last update: 2021-10-13
Started: 2021-06-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
exonProfile for the GRanges objects	exonProfile
geneTypeProfile for the GRanges objects	geneTypeProfile
intronProfile for the GRanges objects	intronProfile
metaGeneProfile for the GRanges objects	metaGeneProfile
motifProfile for the GRanges objects	motifProfile
spliceSiteProfile for the GRanges objects	spliceSiteProfile
windowProfile for the GRanges objects	windowProfile