Package: chromPlot 1.41.0

Karen Y. Orostica

chromPlot: Global visualization tool of genomic data

Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Authors:Ricardo A. Verdugo and Karen Y. Orostica

chromPlot_1.41.0.tar.gz
chromPlot_1.41.0.zip(r-4.7)chromPlot_1.41.0.zip(r-4.6)chromPlot_1.41.0.zip(r-4.5)
chromPlot_1.41.0.tgz(r-4.6-any)chromPlot_1.41.0.tgz(r-4.5-any)
chromPlot_1.41.0.tar.gz(r-4.7-any)chromPlot_1.41.0.tar.gz(r-4.6-any)
chromPlot_1.41.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
chromPlot/json (API)

# Install 'chromPlot' in R:

install.packages('chromPlot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

hg_cytoBandIdeo - CytoBandIdeo human
hg_gap - Human Gap
mm10_cytoBandIdeo - CytoBandIdeo
mm10_gap - Gaps

On BioConductor:chromPlot-1.41.0(bioc 3.24)chromPlot-1.40.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

datarepresentation functionalgenomics genetics sequencing annotation visualization

4.85 score 50 scripts 7 mentions 1 exports 57 dependencies

Last updated from:526bfedf99. Checks:1 ERROR, 6 OK, 3 WARNING. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	204
linux-devel-x86_64	OK	305
source / vignettes	OK	283
linux-release-x86_64	OK	269
macos-release-arm64	OK	146
macos-oldrel-arm64	OK	139
windows-devel	WARNING	208
windows-release	WARNING	192
windows-oldrel	WARNING	241
wasm-release	OK	169

Exports:chromPlot

Dependencies:AnnotationDbi askpass Biobase BiocFileCache BiocGenerics biomaRt Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr fastmap filelock generics GenomicRanges glue hms httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png prettyunits progress purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr xml2 XVector

General Manual

Rendered fromchromPlot.Rnwusingutils::Sweave

Last update: 2017-03-08
Started: 2016-02-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Global visualization tool of genomic data	chromPlot-package
Global visualization tool of genomic data	chromPlot
cytoBandIdeo human	hg_cytoBandIdeo
Human Gap	hg_gap
cytoBandIdeo	mm10_cytoBandIdeo
Gaps	mm10_gap