Package: chromPlot 1.35.0

Karen Y. Orostica

chromPlot: Global visualization tool of genomic data

Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Authors:Ricardo A. Verdugo and Karen Y. Orostica

chromPlot_1.35.0.tar.gz
chromPlot_1.35.0.zip(r-4.5)chromPlot_1.35.0.zip(r-4.4)chromPlot_1.35.0.zip(r-4.3)
chromPlot_1.35.0.tgz(r-4.4-any)chromPlot_1.35.0.tgz(r-4.3-any)
chromPlot_1.35.0.tar.gz(r-4.5-noble)chromPlot_1.35.0.tar.gz(r-4.4-noble)
chromPlot_1.35.0.tgz(r-4.4-emscripten)chromPlot_1.35.0.tgz(r-4.3-emscripten)
chromPlot.pdf |chromPlot.html✨
chromPlot/json (API)
NEWS

# Install 'chromPlot' in R:

install.packages('chromPlot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

hg_cytoBandIdeo - CytoBandIdeo human
hg_gap - Human Gap
mm10_cytoBandIdeo - CytoBandIdeo
mm10_gap - Gaps

On BioConductor:chromPlot-1.35.0(bioc 3.21)chromPlot-1.34.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

datarepresentation functionalgenomics genetics sequencing annotation visualization

4.53 score 24 scripts 446 downloads 7 mentions 1 exports 63 dependencies

Last updated 2 months agofrom:df675e7530. Checks:OK: 4 WARNING: 3. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 06 2024
R-4.5-win	WARNING	Dec 06 2024
R-4.5-linux	OK	Dec 06 2024
R-4.4-win	WARNING	Dec 06 2024
R-4.4-mac	OK	Dec 06 2024
R-4.3-win	WARNING	Dec 06 2024
R-4.3-mac	OK	Dec 06 2024

Exports:chromPlot

Dependencies:AnnotationDbi askpass Biobase BiocFileCache BiocGenerics biomaRt Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr digest dplyr fansi fastmap filelock generics GenomeInfoDb GenomeInfoDbData GenomicRanges glue hms httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig plogr png prettyunits progress purrr R6 rappdirs rlang RSQLite S4Vectors stringi stringr sys tibble tidyr tidyselect UCSC.utils utf8 vctrs withr xml2 XVector zlibbioc

General Manual

Rendered fromchromPlot.Rnwusingutils::Sweaveon Dec 06 2024.

Last update: 2017-03-08
Started: 2016-02-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Global visualization tool of genomic data	chromPlot-package
Global visualization tool of genomic data	chromPlot
cytoBandIdeo human	hg_cytoBandIdeo
Human Gap	hg_gap
cytoBandIdeo	mm10_cytoBandIdeo
Gaps	mm10_gap