Package: chromDraw 2.37.0

Jan Janecka

chromDraw: chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Authors:Jan Janecka, Ing., Mgr. CEITEC Masaryk University

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chromDraw.pdf |chromDraw.html✨
chromDraw/json (API)
NEWS

# Install 'chromDraw' in R:
install.packages('chromDraw', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:chromDraw-2.37.0(bioc 3.21)chromDraw-2.36.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarecpp

3.30 score 1 scripts 211 downloads 1 mentions 5 exports 19 dependencies

Last updated 2 months agofrom:c40d50036d. Checks:OK: 1 WARNING: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-linux-x86_64WARNINGNov 29 2024
R-4.4-win-x86_64WARNINGNov 29 2024
R-4.4-mac-x86_64WARNINGNov 29 2024
R-4.4-mac-aarch64WARNINGNov 29 2024
R-4.3-win-x86_64WARNINGNov 29 2024
R-4.3-mac-x86_64WARNINGNov 29 2024
R-4.3-mac-aarch64WARNINGNov 29 2024

Exports:chromDrawchromDrawGRconvertInputColorsconvertInputDatamain_chromDraw

Dependencies:askpassBiocGenericscurlgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitemimeopensslR6RcppS4VectorssysUCSC.utilsXVectorzlibbioc

chromDraw

Rendered fromchromDraw.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2015-12-15
Started: 2014-12-13