Package: chromDraw 2.43.0

Jan Janecka

chromDraw: chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Authors:Jan Janecka, Ing., Mgr. CEITEC Masaryk University

chromDraw_2.43.0.tar.gz

chromDraw_2.43.0.tgz(r-4.6-x86_64)chromDraw_2.43.0.tgz(r-4.6-arm64)chromDraw_2.43.0.tgz(r-4.5-x86_64)chromDraw_2.43.0.tgz(r-4.5-arm64)
chromDraw_2.43.0.tar.gz(r-4.7-arm64)chromDraw_2.43.0.tar.gz(r-4.7-x86_64)chromDraw_2.43.0.tar.gz(r-4.6-arm64)chromDraw_2.43.0.tar.gz(r-4.6-x86_64)
chromDraw_2.43.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
chromDraw/json (API)

# Install 'chromDraw' in R:

install.packages('chromDraw', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

c++– GNU Standard C++ Library v3

On BioConductor:chromDraw-2.43.0(bioc 3.24)chromDraw-2.42.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software cpp

3.30 score 4 scripts 1 mentions 5 exports 7 dependencies

Last updated from:916938900a. Checks:1 ERROR, 8 WARNING, 2 OK, 3 FAIL. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	184
linux-devel-arm64	WARNING	166
linux-devel-x86_64	WARNING	217
source / vignettes	OK	223
linux-release-arm64	WARNING	200
linux-release-x86_64	WARNING	203
macos-release-arm64	WARNING	170
macos-release-x86_64	WARNING	245
macos-oldrel-arm64	WARNING	104
macos-oldrel-x86_64	WARNING	221
windows-devel	FAIL	122
windows-release	FAIL	125
windows-oldrel	FAIL	95
wasm-release	OK	159

Exports:chromDraw chromDrawGR convertInputColors convertInputData main_chromDraw

Dependencies:BiocGenerics generics GenomicRanges IRanges Rcpp S4Vectors Seqinfo

chromDraw

Data format | Input parameters | Visualization | Acknowledgements

Rendered fromchromDraw.Rnwusingutils::Sweave

Last update: 2015-12-15
Started: 2014-12-13

Help page	Topics
chromDraw - simple karyotype visualization tool.	chromDraw-package
Main chromDraw function. This R function calls the main C++ function.	chromDraw
Function chromDrawGR uses Genomic Ranges as input data format. This R function call the main C++ function.	chromDrawGR
The R function for converting the data frame with colors to chromDraw color data format.	convertInputColors
The R function for converting Genomic Ranges data structure to the chromDraw dat format.	convertInputData
The main chromDraw function, that controls all other C++ functions.	main_chromDraw

Package: chromDraw 2.43.0

chromDraw: chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)