Package: chevreulPlot 0.99.34

Kevin Stachelek

chevreulPlot: Plots used in the chevreulPlot package

Tools for plotting SingleCellExperiment objects in the chevreulPlot package. Includes functions for analysis and visualization of single-cell data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.

Authors:Kevin Stachelek [aut, cre], Bhavana Bhat [aut]

chevreulPlot_0.99.34.tar.gz
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chevreulPlot_0.99.34.tgz(r-4.5-any)chevreulPlot_0.99.34.tgz(r-4.4-any)
chevreulPlot_0.99.34.tar.gz(r-4.5-noble)chevreulPlot_0.99.34.tar.gz(r-4.4-noble)
chevreulPlot_0.99.34.tgz(r-4.4-emscripten)
chevreulPlot.pdf |chevreulPlot.html
chevreulPlot/json (API)
NEWS

# Install 'chevreulPlot' in R:
install.packages('chevreulPlot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cobriniklab/chevreulplot/issues

Datasets:

On BioConductor:chevreulPlot-0.99.32(bioc 3.21)

coveragernaseqsequencingvisualizationgeneexpressiontranscriptionsinglecelltranscriptomicsnormalizationpreprocessingqualitycontroldimensionreductiondataimport

5.08 score 2 scripts 8 exports 224 dependencies

Last updated 11 days agofrom:5e39a4d320. Checks:1 OK, 5 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 28 2025
R-4.5-winNOTEFeb 28 2025
R-4.5-macNOTEFeb 28 2025
R-4.5-linuxNOTEFeb 28 2025
R-4.4-winNOTEFeb 28 2025
R-4.4-macNOTEFeb 28 2025

Exports:make_complex_heatmapplot_all_transcriptsplot_colData_histogramplot_colData_on_embeddingplot_feature_on_embeddingplot_marker_featuresplot_transcript_compositionplot_violin

Dependencies:abindAnnotationDbiAnnotationFilteraskpassassertthatassortheadbackportsbase64encbatchelorbeachmatbeeswarmBHBiobaseBiocGenericsBiocIOBiocNeighborsBiocParallelBiocSingularBiostringsbitbit64bitopsblobblusterbriobslibcachemCairocallrcheckmatechevreulProcesscirclizeclicliprclueclusterclustreecmdfuncodetoolscolorspaceComplexHeatmapcowplotcpp11crayoncredentialscrosstalkcurldata.tableDBIDelayedArrayDelayedMatrixStatsdescdiffobjdigestdoParalleldplyrdqrngedgeREnsDb.Hsapiens.v86ensembldbevaluatefansifarverfastmapFNNfontawesomeforcatsforeachformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgertGetoptLongggbeeswarmggforceggplot2ggraphggrastrggrepelghgitcredsGlobalOptionsgluegraphlayoutsgridExtragtablehighrhmshtmltoolshtmlwidgetshttrhttr2igraphiniIRangesirlbaisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmegadepthmemoisemetapodmgcvmimemunsellnlmeopensslpatchworkpheatmappillarpkgbuildpkgconfigpkgloadplogrplotlypngpolyclippraiseprettyunitsprocessxprogresspromisesProtGenericspspurrrR.methodsS3R.ooR.utilsR6raggrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppMLRcppProgressRCurlreadrResidualMatrixrestfulrRhtslibrjsonrlangrmarkdownrprojrootRsamtoolsRSpectraRSQLiterstudioapirsvdrtracklayerRtsneS4ArraysS4VectorssassScaledMatrixscalesscaterscranscuttleshapeSingleCellExperimentsitmosnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsyssystemfontstestthattextshapingtibbletidygraphtidyrtidyselecttinytextweenrtzdbUCSC.utilsusethisutf8uwotvctrsviporviridisviridisLitevroomwaldowhiskerwiggleplotrwithrxfunXMLXVectoryamlzip

Chevreul

Rendered fromchevreulPlot.Rmdusingknitr::rmarkdownon Feb 28 2025.

Last update: 2025-02-11
Started: 2024-10-23

Visualization

Rendered fromvisualization.Rmdusingknitr::rmarkdownon Feb 28 2025.

Last update: 2025-02-11
Started: 2024-10-23