Package: cellbaseR 1.29.0

Mohammed OE Abdallah

cellbaseR: Querying annotation data from the high performance Cellbase web

This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.

Authors:Mohammed OE Abdallah

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cellbaseR.pdf |cellbaseR.html✨
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Peer review:

Bug tracker:https://github.com/melsiddieg/cellbaser/issues

On BioConductor:cellbaseR-1.29.0(bioc 3.20)cellbaseR-1.28.0(bioc 3.19)

bioconductor-package

21 exports 1.64 score 58 dependencies

Last updated 2 months agofrom:349c4d0eb9

Exports:AnnotateVcfCellBaseParamCellBaseRcreateGeneModelgetCellBasegetCellBaseResourceHelpgetChromosomeInfogetClinicalgetConservationByRegiongetGenegetGeneInfogetMetagetProteingetProteinInfogetRegiongetRegulatoryByRegiongetTranscriptgetTranscriptByGenegetVariantgetVariantAnnotationgetXref

Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurldata.tabledoParalleldplyrfansiforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesiteratorsjsonlitelambda.rlifecyclemagrittrmimeopensslpbapplypillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6RhtslibrlangRsamtoolsS4VectorssnowstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc