Package: cellbaseR 1.31.0
Mohammed OE Abdallah
cellbaseR: Querying annotation data from the high performance Cellbase web
This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.
Authors:
cellbaseR_1.31.0.tar.gz
cellbaseR_1.31.0.zip(r-4.5)cellbaseR_1.31.0.zip(r-4.4)cellbaseR_1.31.0.zip(r-4.3)
cellbaseR_1.31.0.tgz(r-4.4-any)cellbaseR_1.31.0.tgz(r-4.3-any)
cellbaseR_1.31.0.tar.gz(r-4.5-noble)cellbaseR_1.31.0.tar.gz(r-4.4-noble)
cellbaseR_1.31.0.tgz(r-4.4-emscripten)cellbaseR_1.31.0.tgz(r-4.3-emscripten)
cellbaseR.pdf |cellbaseR.html✨
cellbaseR/json (API)
NEWS
| # Install 'cellbaseR' in R: |
| install.packages('cellbaseR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/melsiddieg/cellbaser/issues
On BioConductor:cellbaseR-1.29.0(bioc 3.20)cellbaseR-1.28.0(bioc 3.19)
Last updated 19 days agofrom:76824da3e4. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | OK | Oct 30 2024 |
| R-4.5-linux | OK | Oct 30 2024 |
| R-4.4-win | OK | Oct 30 2024 |
| R-4.4-mac | OK | Oct 30 2024 |
| R-4.3-win | OK | Oct 30 2024 |
| R-4.3-mac | OK | Oct 30 2024 |
Exports:AnnotateVcfCellBaseParamCellBaseRcreateGeneModelgetCellBasegetCellBaseResourceHelpgetChromosomeInfogetClinicalgetConservationByRegiongetGenegetGeneInfogetMetagetProteingetProteinInfogetRegiongetRegulatoryByRegiongetTranscriptgetTranscriptByGenegetVariantgetVariantAnnotationgetXref
Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurldata.tabledoParalleldplyrfansiforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesiteratorsjsonlitelambda.rlifecyclemagrittrmimeopensslpbapplypillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6RhtslibrlangRsamtoolsS4VectorssnowstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| cellbaseR | cellbaseR-package cellbaseR |
| AnnotateVcf | AnnotateVcf AnnotateVcf,CellBaseR-method |
| A Constructor for the CellBaseParam Object | CellBaseParam |
| CellBaseParam Class | CellBaseParam-class |
| CellBaseR | CellBaseR |
| CellBaseR Class | CellBaseR-class |
| createGeneModel | createGeneModel |
| getCellBase | getCellBase getCellBase,CellBaseR-method |
| getCellBaseResourceHelp | getCellBaseResourceHelp |
| getChromosomeInfo | getChromosomeInfo getChromosomeInfo,CellBaseR-method |
| getClinical | getClinical getClinical,CellBaseR-method |
| getConservationByRegion | getConservationByRegion |
| getGene | getGene getGene,CellBaseR-method |
| getGeneInfo | getGeneInfo |
| getMeta | getMeta getMeta,CellBaseR-method |
| getProtein | getProtein getProtein,CellBaseR-method |
| getProteinInfo | getProteinInfo |
| getRegion | getRegion getRegion,CellBaseR-method |
| getRegulatoryByRegion | getRegulatoryByRegion |
| getTranscript | getTranscript getTranscript,CellBaseR-method |
| getTranscriptByGene | getTranscriptByGene |
| getVariant | getVariant getVariant,CellBaseR-method |
| getVariantAnnotation | getVariantAnnotation |
| getXref | getXref getXref,CellBaseR-method |
