Package: ccmap 1.33.0

Alex Pickering

ccmap: Combination Connectivity Mapping

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Authors:Alex Pickering

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ccmap.pdf |ccmap.html✨
ccmap/json (API)

# Install 'ccmap' in R:
install.packages('ccmap', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:ccmap-1.33.0(bioc 3.21)ccmap-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressiontranscriptionmicroarraydifferentialexpression

4.00 score 5 scripts 208 downloads 4 exports 51 dependencies

Last updated 2 months agofrom:5eec3abed2. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-winWARNINGDec 18 2024
R-4.5-linuxWARNINGDec 18 2024
R-4.4-winWARNINGDec 18 2024
R-4.4-macWARNINGDec 18 2024
R-4.3-winWARNINGDec 18 2024
R-4.3-macWARNINGDec 18 2024

Exports:get_dprimesquery_combosquery_drugssum_rowcolCumsum

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobcachemccdataclicodetoolscpp11crayoncurldata.tableDBIdoParallelfastmapforeachgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesiteratorsjsonliteKEGGRESTlatticelifecyclelsaMatrixmemoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorsSnowballCsysUCSC.utilsvctrsxgboostXVectorzlibbioc

Combination Connectivity Mapping

Alex Pickering

Rendered fromccmap-vignette.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2017-04-04
Started: 2016-06-23