Package: ccmap 1.33.0

Alex Pickering

ccmap: Combination Connectivity Mapping

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Authors:Alex Pickering

ccmap_1.33.0.tar.gz
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ccmap_1.33.0.tgz(r-4.4-any)ccmap_1.33.0.tgz(r-4.3-any)
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ccmap.pdf |ccmap.html
ccmap/json (API)

# Install 'ccmap' in R:
install.packages('ccmap', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:ccmap-1.33.0(bioc 3.21)ccmap-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressiontranscriptionmicroarraydifferentialexpression

3.00 score 5 scripts 214 downloads 4 exports 50 dependencies

Last updated 3 months agofrom:5eec3abed2. Checks:5 ERROR, 2 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesFAILJan 17 2025
R-4.5-winERRORJan 17 2025
R-4.5-linuxERRORJan 17 2025
R-4.4-winERRORJan 17 2025
R-4.4-macERRORJan 17 2025
R-4.3-winWARNINGJan 17 2025
R-4.3-macWARNINGJan 17 2025

Exports:get_dprimesquery_combosquery_drugssum_rowcolCumsum

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobcachemccdataclicodetoolscpp11crayoncurldata.tableDBIdoParallelfastmapforeachgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesiteratorsjsonliteKEGGRESTlatticelifecyclelsaMatrixmemoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorsSnowballCsysUCSC.utilsvctrsxgboostXVector