Package: cbaf 1.29.0

Arman Shahrisa

cbaf: Automated functions for comparing various omic data from cbioportal.org

This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.

Authors:Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]

cbaf_1.29.0.tar.gz
cbaf_1.29.0.zip(r-4.5)cbaf_1.29.0.zip(r-4.4)cbaf_1.29.0.zip(r-4.3)
cbaf_1.29.0.tgz(r-4.4-any)cbaf_1.29.0.tgz(r-4.3-any)
cbaf_1.29.0.tar.gz(r-4.5-noble)cbaf_1.29.0.tar.gz(r-4.4-noble)
cbaf_1.29.0.tgz(r-4.4-emscripten)cbaf_1.29.0.tgz(r-4.3-emscripten)
cbaf.pdf |cbaf.html✨
cbaf/json (API)
NEWS

# Install 'cbaf' in R:
install.packages('cbaf', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:cbaf-1.29.0(bioc 3.21)cbaf-1.28.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwareassaydomaindnamethylationgeneexpressiontranscriptionmicroarrayresearchfieldbiomedicalinformaticscomparativegenomicsepigeneticsgeneticstranscriptomics

3.78 score 1 scripts 208 downloads 9 exports 145 dependencies

Last updated 2 months agofrom:8845104c59. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 14 2024
R-4.5-winOKDec 14 2024
R-4.5-linuxOKDec 14 2024
R-4.4-winOKDec 14 2024
R-4.4-macOKDec 14 2024
R-4.3-winOKDec 14 2024
R-4.3-macOKDec 14 2024

Exports:automatedStatisticsavailableDatacleanDatabaseheatmapOutputobtainMultipleStudiesobtainOneStudyprocessMultipleStudiesprocessOneStudyxlsxOutput

Dependencies:abindannotateAnnotationDbiAnVILAnVILBaseaskpassbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbslibcachemcaToolscBioPortalDataclicliprcodetoolscommonmarkcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydigestdplyrDTevaluatefansifastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicDataCommonsGenomicFeaturesGenomicRangesgluegplotsgtoolshighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2IRangesjquerylibjsonliteKEGGRESTKernSmoothknitrlambda.rlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeminiUIMultiAssayExperimentopensslopenxlsxpillarpkgconfigplogrpngprettyunitsprogresspromisespurrrR6RaggedExperimentrapiclientrappdirsRColorBrewerRcppRCurlreadrrestfulrRhtslibrjsonRJSONIOrlangrmarkdownRsamtoolsRSQLiteRTCGAToolboxrtracklayerrvestS4ArraysS4VectorssassselectrshinysnowsourcetoolsSparseArraystringistringrSummarizedExperimentsurvivalsysTCGAutilstibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsvroomwithrxfunXMLxml2xtableXVectoryamlzipzlibbioc

cbaf: an automated, easy-to-use R package for comparing omic data across multiple cancers / a cancer's subgroups

Arman Shahrisa

Rendered fromcbaf.Rmdusingknitr::rmarkdownon Dec 14 2024.

Last update: 2024-06-02
Started: 2017-08-16