Package: cbaf 1.35.0

Arman Shahrisa

cbaf: Automated functions for comparing various omic data from cbioportal.org

This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.

Authors:Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]

cbaf_1.35.0.tar.gz
cbaf_1.35.0.zip(r-4.7)cbaf_1.35.0.zip(r-4.6)cbaf_1.35.0.zip(r-4.5)
cbaf_1.35.0.tgz(r-4.6-any)cbaf_1.35.0.tgz(r-4.5-any)
cbaf_1.35.0.tar.gz(r-4.7-any)cbaf_1.35.0.tar.gz(r-4.6-any)
cbaf_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
cbaf/json (API)
NEWS

# Install 'cbaf' in R:
install.packages('cbaf', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:cbaf-1.35.0(bioc 3.24)cbaf-1.34.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwareassaydomaindnamethylationgeneexpressiontranscriptionmicroarrayresearchfieldbiomedicalinformaticscomparativegenomicsepigeneticsgeneticstranscriptomics

3.48 score 2 scripts 345 downloads 9 exports 146 dependencies

Last updated from:cb59d464b4. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE203
linux-devel-x86_64OK454
source / vignettesOK309
linux-release-x86_64OK424
macos-release-arm64OK287
macos-oldrel-arm64OK346
windows-develOK364
windows-releaseOK404
windows-oldrelOK341
wasm-releaseOK184

Exports:automatedStatisticsavailableDatacleanDatabaseheatmapOutputobtainMultipleStudiesobtainOneStudyprocessMultipleStudiesprocessOneStudyxlsxOutput

Dependencies:abindannotateAnnotationDbiAnVILAnVILBaseaskpassbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbslibcachemcaToolscBioPortalDatacigarilloclicliprcodetoolscommonmarkcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydigestdplyrDTevaluatefastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsGCPtoolsgenefiltergenericsGenomeInfoDbGenomicAlignmentsGenomicDataCommonsGenomicFeaturesGenomicRangesgluegplotsgtoolshighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2IRangesjquerylibjsonliteKEGGRESTKernSmoothkeyringknitrlambda.rlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeminiUIMultiAssayExperimentopensslopenxlsxotelpillarpkgconfigpngprettyunitsprogresspromisespurrrR6RaggedExperimentrapiclientrappdirsRColorBrewerRcppRCurlreadrrestfulrRhtslibrjsonRJSONIOrlangrmarkdownRsamtoolsRSQLiteRTCGAToolboxrtracklayerrvestS4ArraysS4VectorssassselectrSeqinfoshinysnowsourcetoolsSparseArraystringistringrSummarizedExperimentsurvivalsysTCGAutilstibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsvroomwithrxfunXMLxml2xtableXVectoryamlzip

cbaf: an automated, easy-to-use R package for comparing omic data across multiple cancers / a cancer's subgroups

Arman Shahrisa

Rendered fromcbaf.Rmdusingknitr::rmarkdownon Jun 07 2026.

Last update: 2024-06-02
Started: 2017-08-16