Package: canceR 1.39.0
canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC
The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
Authors:
canceR_1.39.0.tar.gz
canceR_1.39.0.zip(r-4.5)canceR_1.39.0.zip(r-4.4)canceR_1.39.0.zip(r-4.3)
canceR_1.39.0.tgz(r-4.4-any)canceR_1.39.0.tgz(r-4.3-any)
canceR_1.39.0.tar.gz(r-4.5-noble)canceR_1.39.0.tar.gz(r-4.4-noble)
canceR.pdf |canceR.html✨
canceR/json (API)
NEWS
# Install 'canceR' in R: |
install.packages('canceR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kmezhoud/cancer/issues
On BioConductor:canceR-1.39.0(bioc 3.20)canceR-1.38.0(bioc 3.19)
Last updated 2 months agofrom:b8c2c911ab
Exports:aboutcanceRcanceR_IssuecanceR_VignetteCGDSdialogGeneClassifierdialoggetGeneListMSigDBdialogMetOptiondialogMutdialogOptionCircosdialogOptionGSEAlmdialogOptionPhenoTestdialogPlotOption_SkinCordialogSamplingGSEAdialogSelectFiles_GSEAdialogSpecificMutdialogSummary_GSEAdisplayInTablegetCasesgetCasesGenProfsgetCircosgetClinicalDataMatrixgetClinicData_MultipleCasesgeteSetgetFreqMutDatagetGCT_CLSfilesgetGCTCLSExamplegetGeneExpMatrixgetGeneListgetGeneListExamplegetGeneListFromMSigDBgetGenesClassifiergetGenesTree_MultipleCasesgetGenesTree_SingleCasegetGenProfsgetGSEAlm_DiseasesgetGSEAlm_VariablesgetInTablegetMegaProfDatagetMetDataMultipleGenesgetMSigDBgetMSigDBExamplegetMSigDBfilegetMutDatagetPhenoTestgetProfDatagetProfilesDataMultipleGenesgetProfilesDataSingleGenegetSpecificMutgetSummaryGSEAgetSurvivalgetTextWinMatch_GeneList_MSigDBmodalDialogplot_1Gene_2GenProfsplot_2Genes_1GenProfplotModelRun.GSEAsetWorkspacetest.CGDStestCheckedCaseGenProfUnifyRowNames
Dependencies:abindannotateAnnotationDbiAnVILaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbitbit64bitopsblobBMAbslibcachemCategorycaToolscBioPortalDatacheckmatecirclizeclassclicliprclustercodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArrayDEoptimRdigestdplyrDTe1071EBarraysellipseevaluatefansifarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenefiltergenericsgeNetClassifierGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicDataCommonsGenomicFeaturesGenomicRangesggplot2GlobalOptionsgluegplotsgraphgridExtraGSEABasegtablegtoolsHeatplushgu133a.dbhighrHmischmshopachhtmlTablehtmltoolshtmlwidgetshttpuvhttrhttr2infotheoinlineIRangesisobandjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleapslifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminetminiUIMultiAssayExperimentmunsellmvtnormnlmennetopensslorg.Hs.eg.dbpcaPPphenoTestpillarpkgconfigplogrplyrpngprettyunitsprogresspromisesproxypurrrR.methodsS3R.ooR6RaggedExperimentrapiclientrappdirsRBGLRColorBrewerRcppRCurlreadrrestfulrRhtslibrjsonRJSONIOrlangrmarkdownrobustbaserpartrrcovRsamtoolsRSQLiterstudioapiRTCGAToolboxrtracklayerRUnitrvestS4ArraysS4VectorssassscalesselectrshapeshinysnowsourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsurvivalsysTCGAutilstibbletidyrtidyselecttinytextkrplottzdbUCSC.utilsutf8vctrsviridisviridisLitevroomwithrxfunXMLxml2xtableXVectoryamlzlibbioc