Package: calm 1.21.0
Kun Liang
calm: Covariate Assisted Large-scale Multiple testing
Statistical methods for multiple testing with covariate information. Traditional multiple testing methods only consider a list of test statistics, such as p-values. Our methods incorporate the auxiliary information, such as the lengths of gene coding regions or the minor allele frequencies of SNPs, to improve power.
Authors:
calm_1.21.0.tar.gz
calm_1.21.0.zip(r-4.5)calm_1.21.0.zip(r-4.4)calm_1.21.0.zip(r-4.3)
calm_1.21.0.tgz(r-4.4-any)calm_1.21.0.tgz(r-4.3-any)
calm_1.21.0.tar.gz(r-4.5-noble)calm_1.21.0.tar.gz(r-4.4-noble)
calm_1.21.0.tgz(r-4.4-emscripten)calm_1.21.0.tgz(r-4.3-emscripten)
calm.pdf |calm.html✨
calm/json (API)
NEWS
| # Install 'calm' in R: |
| install.packages('calm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/k22liang/calm/issues
- pso - Psoriasis RNA-seq dataset
On BioConductor:calm-1.21.0(bioc 3.21)calm-1.20.0(bioc 3.20)
bayesiandifferentialexpressiongeneexpressionregressionmicroarraysequencingrnaseqmultiplecomparisongeneticsimmunooncologymetabolomicsproteomicstranscriptomics
Last updated 2 months agofrom:2e49d35144. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | OK | Nov 29 2024 |
| R-4.5-linux | OK | Nov 29 2024 |
| R-4.4-win | OK | Nov 29 2024 |
| R-4.4-mac | OK | Nov 29 2024 |
| R-4.3-win | OK | Nov 29 2024 |
| R-4.3-mac | OK | Nov 29 2024 |
Exports:CLfdrEstFDREstNullProp_RB
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Covariate Assisted Large-scale Multiple testing | calm |
| Conditional local FDR (CLfdr) | CLfdr |
| FDR estimation | EstFDR |
| Right-boundary procedure | EstNullProp_RB |
| Psoriasis RNA-seq dataset | pso |