Introduction | Installation | Conditional local FDR | Session Information | References
Package: calm 1.27.0
Kun Liang
calm: Covariate Assisted Large-scale Multiple testing
Statistical methods for multiple testing with covariate information. Traditional multiple testing methods only consider a list of test statistics, such as p-values. Our methods incorporate the auxiliary information, such as the lengths of gene coding regions or the minor allele frequencies of SNPs, to improve power.
Authors:
calm_1.27.0.tar.gz
calm_1.27.0.zip(r-4.7)calm_1.27.0.zip(r-4.6)calm_1.27.0.zip(r-4.5)
calm_1.27.0.tgz(r-4.6-any)calm_1.27.0.tgz(r-4.5-any)
calm_1.27.0.tar.gz(r-4.7-any)calm_1.27.0.tar.gz(r-4.6-any)
calm_1.27.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
calm/json (API)
| # Install 'calm' in R: |
| install.packages('calm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/k22liang/calm/issues
Datasets:
- pso - Psoriasis RNA-seq dataset
On BioConductor:calm-1.27.0(bioc 3.24)calm-1.26.0(bioc 3.23)
bayesiandifferentialexpressiongeneexpressionregressionmicroarraysequencingrnaseqmultiplecomparisongeneticsimmunooncologymetabolomicsproteomicstranscriptomics
Last updated from:db7e7856e7. Checks:1 WARNING, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 145 | ||
| linux-devel-x86_64 | OK | 202 | ||
| source / vignettes | OK | 228 | ||
| linux-release-x86_64 | OK | 162 | ||
| macos-release-arm64 | OK | 115 | ||
| macos-oldrel-arm64 | OK | 101 | ||
| windows-devel | OK | 122 | ||
| windows-release | OK | 106 | ||
| windows-oldrel | OK | 110 | ||
| wasm-release | OK | 97 |
Exports:CLfdrEstFDREstNullProp_RB
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Covariate Assisted Large-scale Multiple testing | calm |
| Conditional local FDR (CLfdr) | CLfdr |
| FDR estimation | EstFDR |
| Right-boundary procedure | EstNullProp_RB |
| Psoriasis RNA-seq dataset | pso |