Package: cBioPortalData 2.17.0

Marcel Ramos

cBioPortalData: Exposes and Makes Available Data from the cBioPortal Web Resources

The cBioPortalData R package accesses study datasets from the cBio Cancer Genomics Portal. It accesses the data either from the pre-packaged zip / tar files or from the API interface that was recently implemented by the cBioPortal Data Team. The package can provide data in either tabular format or with MultiAssayExperiment object that uses familiar Bioconductor data representations.

Authors:Levi Waldron [aut], Marcel Ramos [aut, cre], Karim Mezhoud [ctb]

cBioPortalData_2.17.0.tar.gz
cBioPortalData_2.17.0.zip(r-4.5)cBioPortalData_2.17.0.zip(r-4.4)cBioPortalData_2.17.0.zip(r-4.3)
cBioPortalData_2.17.0.tgz(r-4.4-any)cBioPortalData_2.17.0.tgz(r-4.3-any)
cBioPortalData_2.17.0.tar.gz(r-4.5-noble)cBioPortalData_2.17.0.tar.gz(r-4.4-noble)
cBioPortalData_2.17.0.tgz(r-4.4-emscripten)cBioPortalData_2.17.0.tgz(r-4.3-emscripten)
cBioPortalData.pdf |cBioPortalData.html✨
cBioPortalData/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/waldronlab/cbioportaldata/issues

On BioConductor:cBioPortalData-2.17.0(bioc 3.20)cBioPortalData-2.16.0(bioc 3.19)

bioconductor-package

29 exports 2.35 score 133 dependencies 4 dependents 1 mentions

Last updated 2 months agofrom:b171bcd851

Exports:allSamplescBioCachecBioDataPackcBioPortalcBioPortalDataclinicalDatadownloadStudyfetchDatagenePanelMoleculargenePanelsgeneTablegetDataByGenesgetGenePanelgetGenePanelMoleculargetSampleInfogetStudiesloadStudymolecularDatamolecularProfilesmutationDataoperationsqueryGeneTableremoveDataCacheremovePackCachesampleListssamplesInSampleListssearchOpssetCacheuntarStudy

Dependencies:abindAnnotationDbiAnVILaskpassbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbitbit64bitopsblobbslibcachemclicliprcodetoolscommonmarkcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydigestdplyrDTevaluatefansifastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicDataCommonsGenomicFeaturesGenomicRangesgluehighrhmshtmltoolshtmlwidgetshttpuvhttrIRangesjquerylibjsonliteKEGGRESTknitrlambda.rlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeminiUIMultiAssayExperimentopensslpillarpkgconfigplogrpngprettyunitsprogresspromisespurrrR6RaggedExperimentrapiclientrappdirsRcppRCurlreadrrestfulrRhtslibrjsonRJSONIOrlangrmarkdownRsamtoolsRSQLiteRTCGAToolboxrtracklayerrvestS4ArraysS4VectorssassselectrshinysnowsourcetoolsSparseArraystringistringrSummarizedExperimentsysTCGAutilstibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsvroomwithrxfunXMLxml2xtableXVectoryamlzlibbioc