Overview | Installation | Getting Started | Downloading the BRENDA Text File | Making Queries | Query for Multiple Enzymes | Query Specific Fields | Query Specific Organisms | Extract Information in Query Results | Foreign ID Retrieval | Querying Synonyms | BioCyc Pathways | Additional Information
Package: brendaDb 1.27.0
Yi Zhou
brendaDb: The BRENDA Enzyme Database
R interface for importing and analyzing enzyme information from the BRENDA database.
Authors:
brendaDb_1.27.0.tar.gz
brendaDb_1.27.0.zip(r-4.7)brendaDb_1.27.0.zip(r-4.6)brendaDb_1.27.0.zip(r-4.5)
brendaDb_1.27.0.tgz(r-4.6-x86_64)brendaDb_1.27.0.tgz(r-4.6-arm64)brendaDb_1.27.0.tgz(r-4.5-x86_64)brendaDb_1.27.0.tgz(r-4.5-arm64)
brendaDb_1.27.0.tar.gz(r-4.7-arm64)brendaDb_1.27.0.tar.gz(r-4.7-x86_64)brendaDb_1.27.0.tar.gz(r-4.6-arm64)brendaDb_1.27.0.tar.gz(r-4.6-x86_64)
brendaDb_1.27.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
brendaDb/json (API)
| # Install 'brendaDb' in R: |
| install.packages('brendaDb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/y1zhou/brendadb/issues
On BioConductor:brendaDb-1.27.0(bioc 3.24)brendaDb-1.26.0(bioc 3.23)
thirdpartyclientannotationdataimportbrendadatabaseenzymehacktoberfestcpp
Last updated from:dc27a518b6. Checks:1 WARNING, 11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 144 | ||
| linux-devel-arm64 | NOTE | 185 | ||
| linux-devel-x86_64 | NOTE | 190 | ||
| source / vignettes | OK | 334 | ||
| linux-release-arm64 | NOTE | 197 | ||
| linux-release-x86_64 | NOTE | 264 | ||
| macos-release-arm64 | NOTE | 117 | ||
| macos-release-x86_64 | NOTE | 301 | ||
| macos-oldrel-arm64 | NOTE | 139 | ||
| macos-oldrel-x86_64 | NOTE | 277 | ||
| windows-devel | NOTE | 183 | ||
| windows-release | NOTE | 161 | ||
| windows-oldrel | NOTE | 194 | ||
| wasm-release | OK | 164 |
Exports:DownloadBrendaExtractFieldID2Enzymeis.brenda.deprecated.entryis.brenda.entryQueryBrendaReadBrendaShowFields
Dependencies:askpassBHBiocFileCacheBiocParallelbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdbplyrdplyrfastmapfilelockformatRfutile.loggerfutile.optionsgenericsgluehttr2lambda.rlifecyclemagrittrmemoiseopensslpillarpkgconfigpurrrR6rappdirsRcpprlangRSQLitesnowstringistringrsystibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| brendaDb: the BRENDA enzyme database. | brendaDb-package brendaDb |
| Download and unzip the BRENDA text file. | DownloadBrenda |
| Extract a specific field from a brenda.entries object. | ExtractField |
| A helper function for converting names/synonyms to EC numbers. | ID2Enzyme |
| Show the number of regular and transferred/deleted brenda.entry objects in the brenda.entries list. | print.brenda.entries |
| Show the non-empty fields in the query result. | print.brenda.entry |
| Query for multiple enzymes. | QueryBrenda |
| Read BRENDA text file into matrix. | ReadBrenda |
| Read raw BRENDA text file. | ReadBrendaFile |
| Convert vector of lines to matrix. | SeparateEntries |
| Show all unique BRENDA fields and their corresponding acronyms. | ShowFields |
