Package: brendaDb 1.19.0
Yi Zhou
brendaDb: The BRENDA Enzyme Database
R interface for importing and analyzing enzyme information from the BRENDA database.
Authors:
brendaDb_1.19.0.tar.gz
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brendaDb_1.19.0.tgz(r-4.4-arm64)brendaDb_1.19.0.tgz(r-4.4-x86_64)brendaDb_1.19.0.tgz(r-4.3-arm64)brendaDb_1.19.0.tgz(r-4.3-x86_64)
brendaDb_1.19.0.tar.gz(r-4.5-noble)brendaDb_1.19.0.tar.gz(r-4.4-noble)
brendaDb_1.19.0.tgz(r-4.4-emscripten)brendaDb_1.19.0.tgz(r-4.3-emscripten)
brendaDb.pdf |brendaDb.html✨
brendaDb/json (API)
NEWS
| # Install 'brendaDb' in R: |
| install.packages('brendaDb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/y1zhou/brendadb/issues
On BioConductor:brendaDb-1.19.0(bioc 3.20)brendaDb-1.18.0(bioc 3.19)
Last updated 2 months agofrom:1d08ce5b58
Exports:DownloadBrendaExtractFieldID2Enzymeis.brenda.deprecated.entryis.brenda.entryQueryBrendaReadBrendaShowFields
Dependencies:askpassBHBiocFileCacheBiocParallelbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdbplyrdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsgluehttrjsonlitelambda.rlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpurrrR6rappdirsRcpprlangRSQLitesnowstringistringrsystibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| brendaDb: the BRENDA enzyme database. | brendaDb-package brendaDb |
| Download and unzip the BRENDA text file. | DownloadBrenda |
| Extract a specific field from a brenda.entries object. | ExtractField |
| A helper function for converting names/synonyms to EC numbers. | ID2Enzyme |
| Show the number of regular and transferred/deleted brenda.entry objects in the brenda.entries list. | print.brenda.entries |
| Show the non-empty fields in the query result. | print.brenda.entry |
| Query for multiple enzymes. | QueryBrenda |
| Read BRENDA text file into matrix. | ReadBrenda |
| Read raw BRENDA text file. | ReadBrendaFile |
| Convert vector of lines to matrix. | SeparateEntries |
| Show all unique BRENDA fields and their corresponding acronyms. | ShowFields |
