Package: brendaDb 1.21.0
brendaDb: The BRENDA Enzyme Database
R interface for importing and analyzing enzyme information from the BRENDA database.
Authors:
brendaDb_1.21.0.tar.gz
brendaDb_1.21.0.zip(r-4.5)brendaDb_1.21.0.zip(r-4.4)brendaDb_1.21.0.zip(r-4.3)
brendaDb_1.21.0.tgz(r-4.4-x86_64)brendaDb_1.21.0.tgz(r-4.4-arm64)brendaDb_1.21.0.tgz(r-4.3-x86_64)brendaDb_1.21.0.tgz(r-4.3-arm64)
brendaDb_1.21.0.tar.gz(r-4.5-noble)brendaDb_1.21.0.tar.gz(r-4.4-noble)
brendaDb_1.21.0.tgz(r-4.4-emscripten)brendaDb_1.21.0.tgz(r-4.3-emscripten)
brendaDb.pdf |brendaDb.html✨
brendaDb/json (API)
NEWS
# Install 'brendaDb' in R: |
install.packages('brendaDb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/y1zhou/brendadb/issues
On BioConductor:brendaDb-1.19.0(bioc 3.20)brendaDb-1.18.0(bioc 3.19)
thirdpartyclientannotationdataimportbrendadatabaseenzymehacktoberfest
Last updated 23 days agofrom:513401a5ba. Checks:OK: 1 NOTE: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 30 2024 |
R-4.5-win-x86_64 | NOTE | Oct 30 2024 |
R-4.5-linux-x86_64 | NOTE | Oct 30 2024 |
R-4.4-win-x86_64 | NOTE | Oct 30 2024 |
R-4.4-mac-x86_64 | NOTE | Oct 30 2024 |
R-4.4-mac-aarch64 | NOTE | Oct 30 2024 |
R-4.3-win-x86_64 | NOTE | Oct 30 2024 |
R-4.3-mac-x86_64 | NOTE | Oct 30 2024 |
R-4.3-mac-aarch64 | NOTE | Oct 30 2024 |
Exports:DownloadBrendaExtractFieldID2Enzymeis.brenda.deprecated.entryis.brenda.entryQueryBrendaReadBrendaShowFields
Dependencies:askpassBHBiocFileCacheBiocParallelbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdbplyrdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsgluehttrjsonlitelambda.rlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpurrrR6rappdirsRcpprlangRSQLitesnowstringistringrsystibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
brendaDb: the BRENDA enzyme database. | brendaDb-package brendaDb |
Download and unzip the BRENDA text file. | DownloadBrenda |
Extract a specific field from a brenda.entries object. | ExtractField |
A helper function for converting names/synonyms to EC numbers. | ID2Enzyme |
Show the number of regular and transferred/deleted brenda.entry objects in the brenda.entries list. | print.brenda.entries |
Show the non-empty fields in the query result. | print.brenda.entry |
Query for multiple enzymes. | QueryBrenda |
Read BRENDA text file into matrix. | ReadBrenda |
Read raw BRENDA text file. | ReadBrendaFile |
Convert vector of lines to matrix. | SeparateEntries |
Show all unique BRENDA fields and their corresponding acronyms. | ShowFields |