Package: biodbHmdb 1.13.0

Pierrick Roger

biodbHmdb: biodbHmdb, a library for connecting to the HMDB Database

The biodbHmdb library is an extension of the biodb framework package that provides access to the HMDB Metabolites database. It allows to download the whole HMDB Metabolites database locally, access entries and search for entries by name or description. A future version of this package will also include a search by mass and mass spectra annotation.

Authors:Pierrick Roger [aut, cre]

biodbHmdb_1.13.0.tar.gz
biodbHmdb_1.13.0.zip(r-4.5)biodbHmdb_1.13.0.zip(r-4.4)biodbHmdb_1.13.0.zip(r-4.3)
biodbHmdb_1.13.0.tgz(r-4.5-x86_64)biodbHmdb_1.13.0.tgz(r-4.5-arm64)biodbHmdb_1.13.0.tgz(r-4.4-x86_64)biodbHmdb_1.13.0.tgz(r-4.4-arm64)biodbHmdb_1.13.0.tgz(r-4.3-x86_64)biodbHmdb_1.13.0.tgz(r-4.3-arm64)
biodbHmdb_1.13.0.tar.gz(r-4.5-noble)biodbHmdb_1.13.0.tar.gz(r-4.4-noble)
biodbHmdb_1.13.0.tgz(r-4.4-emscripten)biodbHmdb_1.13.0.tgz(r-4.3-emscripten)
biodbHmdb.pdf |biodbHmdb.html
biodbHmdb/json (API)
NEWS

# Install 'biodbHmdb' in R:
install.packages('biodbHmdb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pkrog/biodbhmdb/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:biodbHmdb-1.13.0(bioc 3.21)biodbHmdb-1.12.0(bioc 3.20)

softwareinfrastructuredataimportcpp

4.30 score 2 stars 2 scripts 230 downloads 3 exports 71 dependencies

Last updated 5 months agofrom:d2b9830881. Checks:1 OK, 11 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-win-x86_64WARNINGMar 29 2025
R-4.5-mac-x86_64WARNINGMar 29 2025
R-4.5-mac-aarch64WARNINGMar 29 2025
R-4.5-linux-x86_64WARNINGMar 29 2025
R-4.4-win-x86_64WARNINGMar 29 2025
R-4.4-mac-x86_64WARNINGMar 29 2025
R-4.4-mac-aarch64WARNINGMar 29 2025
R-4.4-linux-x86_64WARNINGMar 29 2025
R-4.3-win-x86_64WARNINGMar 29 2025
R-4.3-mac-x86_64WARNINGMar 29 2025
R-4.3-mac-aarch64WARNINGMar 29 2025

Exports:HmdbMetabolitesConnHmdbMetabolitesEntryhmdbToSqlite

Dependencies:askpassBiocFileCachebiodbbitbit64bitopsblobbriocachemcallrchkclicpp11crayoncurlDBIdbplyrdescdiffobjdigestdplyrevaluatefansifastmapfilelockfsgenericsgit2rgluehmshttrjsonlitelgrlifecyclemagrittrmemoisemimeopensslpillarpkgbuildpkgconfigpkgloadplogrplyrpraiseprettyunitsprocessxprogresspspurrrR6rappdirsRcppRCurlrlangrprojrootRSQLitestringistringrsystestthattibbletidyrtidyselectutf8vctrswaldowithrXMLyamlzip

An introduction to biodbHmdb

Rendered frombiodbHmdb.Rmdusingknitr::rmarkdownon Mar 29 2025.

Last update: 2021-10-12
Started: 2021-10-12