Package: biodbHmdb 1.11.0

Pierrick Roger

biodbHmdb: biodbHmdb, a library for connecting to the HMDB Database

The biodbHmdb library is an extension of the biodb framework package that provides access to the HMDB Metabolites database. It allows to download the whole HMDB Metabolites database locally, access entries and search for entries by name or description. A future version of this package will also include a search by mass and mass spectra annotation.

Authors:Pierrick Roger [aut, cre]

biodbHmdb_1.11.0.tar.gz
biodbHmdb_1.11.0.zip(r-4.5)biodbHmdb_1.11.0.zip(r-4.4)biodbHmdb_1.11.0.zip(r-4.3)
biodbHmdb_1.11.0.tgz(r-4.4-arm64)biodbHmdb_1.11.0.tgz(r-4.4-x86_64)biodbHmdb_1.11.0.tgz(r-4.3-arm64)biodbHmdb_1.11.0.tgz(r-4.3-x86_64)
biodbHmdb_1.11.0.tar.gz(r-4.5-noble)biodbHmdb_1.11.0.tar.gz(r-4.4-noble)
biodbHmdb_1.11.0.tgz(r-4.4-emscripten)biodbHmdb_1.11.0.tgz(r-4.3-emscripten)
biodbHmdb.pdf |biodbHmdb.html✨
biodbHmdb/json (API)
NEWS

# Install 'biodbHmdb' in R:
install.packages('biodbHmdb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/pkrog/biodbhmdb/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:biodbHmdb-1.11.0(bioc 3.20)biodbHmdb-1.10.0(bioc 3.19)

bioconductor-package

3 exports 0.61 score 72 dependencies

Last updated 2 months agofrom:c3d59a44df

Exports:HmdbMetabolitesConnHmdbMetabolitesEntryhmdbToSqlite

Dependencies:askpassBiocFileCachebiodbbitbit64bitopsblobbriocachemcallrchkclicpp11crayoncurlDBIdbplyrdescdiffobjdigestdplyrevaluatefansifastmapfilelockfsgenericsgit2rgluehmshttrjsonlitelgrlifecyclemagrittrmemoisemimeopensslpillarpkgbuildpkgconfigpkgloadplogrplyrpraiseprettyunitsprocessxprogresspspurrrR6rappdirsRcppRCurlrematch2rlangrprojrootRSQLitestringistringrsystestthattibbletidyrtidyselectutf8vctrswaldowithrXMLyamlzip

An introduction to biodbHmdb

Pierrick Roger

Rendered frombiodbHmdb.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2021-10-12
Started: 2021-10-12