Package: biodbHmdb 1.13.0

Pierrick Roger

biodbHmdb: biodbHmdb, a library for connecting to the HMDB Database

The biodbHmdb library is an extension of the biodb framework package that provides access to the HMDB Metabolites database. It allows to download the whole HMDB Metabolites database locally, access entries and search for entries by name or description. A future version of this package will also include a search by mass and mass spectra annotation.

Authors:Pierrick Roger [aut, cre]

biodbHmdb_1.13.0.tar.gz
biodbHmdb_1.13.0.zip(r-4.5)biodbHmdb_1.13.0.zip(r-4.4)biodbHmdb_1.13.0.zip(r-4.3)
biodbHmdb_1.13.0.tgz(r-4.4-x86_64)biodbHmdb_1.13.0.tgz(r-4.4-arm64)biodbHmdb_1.13.0.tgz(r-4.3-x86_64)biodbHmdb_1.13.0.tgz(r-4.3-arm64)
biodbHmdb_1.13.0.tar.gz(r-4.5-noble)biodbHmdb_1.13.0.tar.gz(r-4.4-noble)
biodbHmdb_1.13.0.tgz(r-4.4-emscripten)biodbHmdb_1.13.0.tgz(r-4.3-emscripten)
biodbHmdb.pdf |biodbHmdb.html
biodbHmdb/json (API)
NEWS

# Install 'biodbHmdb' in R:
install.packages('biodbHmdb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/pkrog/biodbhmdb/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:biodbHmdb-1.13.0(bioc 3.21)biodbHmdb-1.12.0(bioc 3.20)

softwareinfrastructuredataimportcpp

4.30 score 2 stars 2 scripts 170 downloads 3 exports 71 dependencies

Last updated 2 months agofrom:d2b9830881. Checks:OK: 1 WARNING: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-win-x86_64WARNINGNov 29 2024
R-4.5-linux-x86_64WARNINGNov 29 2024
R-4.4-win-x86_64WARNINGNov 29 2024
R-4.4-mac-x86_64WARNINGNov 29 2024
R-4.4-mac-aarch64WARNINGNov 29 2024
R-4.3-win-x86_64WARNINGNov 29 2024
R-4.3-mac-x86_64WARNINGNov 29 2024
R-4.3-mac-aarch64WARNINGNov 29 2024

Exports:HmdbMetabolitesConnHmdbMetabolitesEntryhmdbToSqlite

Dependencies:askpassBiocFileCachebiodbbitbit64bitopsblobbriocachemcallrchkclicpp11crayoncurlDBIdbplyrdescdiffobjdigestdplyrevaluatefansifastmapfilelockfsgenericsgit2rgluehmshttrjsonlitelgrlifecyclemagrittrmemoisemimeopensslpillarpkgbuildpkgconfigpkgloadplogrplyrpraiseprettyunitsprocessxprogresspspurrrR6rappdirsRcppRCurlrlangrprojrootRSQLitestringistringrsystestthattibbletidyrtidyselectutf8vctrswaldowithrXMLyamlzip

An introduction to biodbHmdb

Rendered frombiodbHmdb.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2021-10-12
Started: 2021-10-12