Package: bgx 1.71.0

Ernest Turro

bgx: Bayesian Gene eXpression

Bayesian integrated analysis of Affymetrix GeneChips

Authors:Ernest Turro, Graeme Ambler, Anne-Mette K Hein

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bgx.pdf |bgx.html✨
bgx/json (API)

# Install 'bgx' in R:
install.packages('bgx', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:bgx-1.71.0(bioc 3.20)bgx-1.70.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

8 exports 1.24 score 25 dependencies 1 mentions

Last updated 2 months agofrom:531f9838a2

Exports:bgxplotDEDensityplotDEHistogramplotDiffRankplotExpressionDensityrankByDEreadOutput.bgxstandalone.bgx

Dependencies:affyaffyioaskpassBiobaseBiocGenericsBiocManagerBiostringscrayoncurlgcrmaGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslpreprocessCoreR6RcppS4VectorssysUCSC.utilsXVectorzlibbioc

Readme and manuals

Help Manual

Help pageTopics
Analyse BGX output.analysis.bgx plotDEDensity plotDEHistogram plotDiffRank plotExpressionDensity rankByDE
Fully Bayesian integrated approach to the analysis of Affymetrix GeneChip databgx standalone.bgx
Read in the output from a BGX run.readOutput.bgx