Package: bgx 1.73.0
Ernest Turro
bgx: Bayesian Gene eXpression
Bayesian integrated analysis of Affymetrix GeneChips
Authors:
bgx_1.73.0.tar.gz
bgx_1.73.0.zip(r-4.5)bgx_1.73.0.zip(r-4.4)bgx_1.73.0.zip(r-4.3)
bgx_1.73.0.tgz(r-4.4-x86_64)bgx_1.73.0.tgz(r-4.4-arm64)bgx_1.73.0.tgz(r-4.3-x86_64)bgx_1.73.0.tgz(r-4.3-arm64)
bgx_1.73.0.tar.gz(r-4.5-noble)bgx_1.73.0.tar.gz(r-4.4-noble)
bgx_1.73.0.tgz(r-4.4-emscripten)bgx_1.73.0.tgz(r-4.3-emscripten)
bgx.pdf |bgx.html✨
bgx/json (API)
| # Install 'bgx' in R: |
| install.packages('bgx', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:bgx-1.73.0(bioc 3.21)bgx-1.72.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraydifferentialexpression
Last updated 23 days agofrom:6430db5251. Checks:ERROR: 2 WARNING: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Nov 09 2024 |
| R-4.5-win-x86_64 | WARNING | Nov 09 2024 |
| R-4.5-linux-x86_64 | ERROR | Nov 09 2024 |
| R-4.4-win-x86_64 | WARNING | Nov 09 2024 |
| R-4.4-mac-x86_64 | WARNING | Nov 09 2024 |
| R-4.4-mac-aarch64 | WARNING | Nov 09 2024 |
| R-4.3-win-x86_64 | WARNING | Nov 09 2024 |
| R-4.3-mac-x86_64 | WARNING | Nov 09 2024 |
| R-4.3-mac-aarch64 | WARNING | Nov 09 2024 |
Exports:bgxplotDEDensityplotDEHistogramplotDiffRankplotExpressionDensityrankByDEreadOutput.bgxstandalone.bgx
Dependencies:affyaffyioaskpassBiobaseBiocGenericsBiocManagerBiostringscrayoncurlgcrmagenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslpreprocessCoreR6RcppS4VectorssysUCSC.utilsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Analyse BGX output. | analysis.bgx plotDEDensity plotDEHistogram plotDiffRank plotExpressionDensity rankByDE |
| Fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data | bgx standalone.bgx |
| Read in the output from a BGX run. | readOutput.bgx |
