Package: beachmat.tiledb 0.99.1

Aaron Lun

beachmat.tiledb: beachmat bindings for TileDB-backed matrices

Extends beachmat to initialize tatami matrices from TileDB-backed arrays. This allows C++ code in downstream packages to directly call the TileDB C/C++ library to access array data, without the need for block processing via DelayedArray. Developers only need to import this package to automatically extend the capabilities of beachmat::initializeCpp to TileDBArray instances.

Authors:Aaron Lun [aut, cre]

beachmat.tiledb_0.99.1.tar.gz

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beachmat.tiledb.pdf |beachmat.tiledb.html✨
beachmat.tiledb/json (API)
NEWS

# Install 'beachmat.tiledb' in R:

install.packages('beachmat.tiledb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tatami-inc/beachmat.tiledb/issues

Uses libs:

c++– GNU Standard C++ Library v3

On BioConductor:beachmat.tiledb-0.99.1(bioc 3.21)

datarepresentation dataimport infrastructure cpp

4.65 score 4 scripts 3 mentions 3 exports 29 dependencies

Last updated 29 days agofrom:ddcfd81ade. Checks:5 OK, 1 WARNING. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 05 2025
R-4.5-linux-x86_64	WARNING	Jan 05 2025
R-4.4-mac-x86_64	OK	Jan 05 2025
R-4.4-mac-aarch64	OK	Jan 05 2025
R-4.3-mac-x86_64	OK	Jan 05 2025
R-4.3-mac-aarch64	OK	Jan 05 2025

Exports:initializeCpp initializeOptions loadIntoMemory

Dependencies:abind assorthead beachmat BiocGenerics bit bit64 crayon DelayedArray generics IRanges lattice Matrix MatrixGenerics matrixStats nanoarrow nanotime Rcpp RcppCCTZ RcppDate RcppInt64 RcppSpdlog S4Arrays S4Vectors SparseArray spdl tiledb TileDBArray XVector zoo

Using TileDB-backed matrices with beachmat

Aaron Lun

Rendered fromuserguide.Rmdusingknitr::rmarkdownon Jan 05 2025.

Last update: 2024-09-30
Started: 2024-09-30

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Initialize TileDB-backed matrices	initializeCpp initializeCpp,TileDBArraySeed-method
Options for TileDB matrices	initializeOptions
Load a TileDB matrix into memory	loadIntoMemory