Package: bayNorm 1.25.0

Wenhao Tang

bayNorm: Single-cell RNA sequencing data normalization

bayNorm is used for normalizing single-cell RNA-seq data.

Authors:Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut]

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bayNorm.pdf |bayNorm.html✨
bayNorm/json (API)
NEWS

# Install 'bayNorm' in R:
install.packages('bayNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/wt215/baynorm/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On BioConductor:bayNorm-1.23.0(bioc 3.20)bayNorm-1.22.0(bioc 3.19)

immunooncologynormalizationrnaseqsinglecellsequencingscrnaseq

6.11 score 9 stars 36 scripts 326 downloads 17 exports 51 dependencies

Last updated 23 days agofrom:43039eceb2. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-win-x86_64NOTEOct 30 2024
R-4.5-linux-x86_64NOTEOct 30 2024
R-4.4-win-x86_64NOTEOct 30 2024
R-4.4-mac-x86_64NOTEOct 30 2024
R-4.4-mac-aarch64NOTEOct 30 2024
R-4.3-win-x86_64NOTEOct 30 2024
R-4.3-mac-x86_64NOTEOct 30 2024
R-4.3-mac-aarch64NOTEOct 30 2024

Exports:AdjustSIZE_funas_matrixasMatrixbayNormbayNorm_supBB_FunBetaFunCheck_inputDownSamplingEstPriorEstPrior_rcppEstPrior_sprcppNOISY_FUNnoisy_gene_detectionPrior_funSyntheticControlt_sp

Dependencies:abindaskpassBBBHBiobaseBiocGenericsBiocParallelcodetoolscpp11crayoncurlDelayedArraydoSNOWfitdistrplusforeachformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesiteratorsjsonlitelambda.rlatticelocfitMASSMatrixMatrixGenericsmatrixStatsmimeopensslquadprogR6RcppRcppArmadilloRcppProgressrlangS4ArraysS4VectorsSingleCellExperimentsnowSparseArraySummarizedExperimentsurvivalsysUCSC.utilsXVectorzlibbioc

Introduction to bayNorm

Wenhao Tang, Fran<U+00E7>ois Bertaux, Philipp Thomas, Claire Stefanelli, Malika Saint, Samuel Marguerat, Vahid Shahrezaei

Rendered frombayNorm.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2019-03-26
Started: 2017-12-11