Package: basilisk 1.19.3
Aaron Lun
basilisk: Freezing Python Dependencies Inside Bioconductor Packages
Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.
Authors:
basilisk_1.19.3.tar.gz
basilisk_1.19.3.zip(r-4.5)basilisk_1.19.3.zip(r-4.4)basilisk_1.19.3.zip(r-4.3)
basilisk_1.19.3.tgz(r-4.5-any)basilisk_1.19.3.tgz(r-4.4-any)basilisk_1.19.3.tgz(r-4.3-any)
basilisk_1.19.3.tar.gz(r-4.5-noble)basilisk_1.19.3.tar.gz(r-4.4-noble)
basilisk_1.19.3.tgz(r-4.4-emscripten)basilisk_1.19.3.tgz(r-4.3-emscripten)
basilisk.pdf |basilisk.html✨
basilisk/json (API)
NEWS
| # Install 'basilisk' in R: |
| install.packages('basilisk', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ltla/basilisk/issues
On BioConductor:basilisk-1.19.1(bioc 3.21)basilisk-1.18.0(bioc 3.20)
Last updated 5 days agofrom:2732c8bf9a. Checks:1 OK, 8 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 21 2025 |
| R-4.5-win | NOTE | Mar 21 2025 |
| R-4.5-mac | NOTE | Mar 21 2025 |
| R-4.5-linux | NOTE | Mar 21 2025 |
| R-4.4-win | NOTE | Mar 21 2025 |
| R-4.4-mac | NOTE | Mar 21 2025 |
| R-4.4-linux | NOTE | Mar 21 2025 |
| R-4.3-win | NOTE | Mar 21 2025 |
| R-4.3-mac | NOTE | Mar 21 2025 |
Exports:BasiliskEnvironmentbasiliskRunbasiliskStartbasiliskStopconfigureBasiliskEnvcreateLocalBasiliskEnvfindPersistentEnvgetBasiliskCheckVersionsgetBasiliskForceFallbackgetBasiliskForkgetBasiliskSharedlistCorePackageslistPackageslistPythonVersionobtainEnvironmentPathPyPiLinksetBasiliskCheckVersionssetBasiliskForceFallbacksetBasiliskForksetBasiliskSharedsetupBasiliskEnvuseBasiliskEnv
Dependencies:basilisk.utilsdir.expiryfilelockherejsonlitelatticeMatrixpngrappdirsRcppRcppTOMLreticulaterlangrprojrootwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The BasiliskEnvironment class | BasiliskEnvironment BasiliskEnvironment-class |
| Start and stop 'basilisk'-related processes | basiliskRun basiliskStart basiliskStop |
| Configure client environments | configureBasiliskEnv |
| Create a local conda environment manually | createLocalBasiliskEnv |
| Find the persistent environment | findPersistentEnv |
| Options for 'basilisk' | getBasiliskCheckVersions getBasiliskForceFallback getBasiliskFork getBasiliskShared setBasiliskCheckVersions setBasiliskForceFallback setBasiliskFork setBasiliskShared |
| List packages | listCorePackages listPackages listPythonVersion |
| Obtain the environment path | obtainEnvironmentPath |
| Link to PyPi | PyPiLink |
| Set up 'basilisk'-managed environments | setupBasiliskEnv |
| Use 'basilisk' environments | useBasiliskEnv |
