Overview | For package developers | Setting up the package | Specifying Python environments | Defining BasiliskEnvironment objects | Populating environments on installation | Using the environments | Basics | Function constraints | Persisting variables across calls | For end users | Troubleshooting known issues | Fine-tuning basilisk's behavior | Using basilisk directly for analyses | Session information
Package: basilisk 1.25.0
Aaron Lun
basilisk: Freezing Python Dependencies Inside Bioconductor Packages
Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.
Authors:
basilisk_1.25.0.tar.gz
basilisk_1.25.0.zip(r-4.7)basilisk_1.25.0.zip(r-4.6)basilisk_1.25.0.zip(r-4.5)
basilisk_1.25.0.tgz(r-4.6-any)basilisk_1.25.0.tgz(r-4.5-any)
basilisk_1.25.0.tar.gz(r-4.7-any)basilisk_1.25.0.tar.gz(r-4.6-any)
basilisk_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
basilisk/json (API)
| # Install 'basilisk' in R: |
| install.packages('basilisk', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ltla/basilisk/issues
On BioConductor:basilisk-1.25.0(bioc 3.24)basilisk-1.24.0(bioc 3.23)
infrastructurebioconductor-package
Last updated from:33507d8a4a. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 160 | ||
| linux-devel-x86_64 | NOTE | 2252 | ||
| source / vignettes | OK | 1137 | ||
| linux-release-x86_64 | NOTE | 2305 | ||
| macos-release-arm64 | NOTE | 629 | ||
| macos-oldrel-arm64 | NOTE | 642 | ||
| windows-devel | NOTE | 635 | ||
| windows-release | NOTE | 550 | ||
| windows-oldrel | NOTE | 683 | ||
| wasm-release | OK | 138 |
Exports:BasiliskEnvironmentbasiliskRunbasiliskStartbasiliskStopclearExternalDirconfigureBasiliskEnvcreateLocalBasiliskEnvdefaultPythonVersiondestroyOldVersionsgetBasiliskCheckVersionsgetBasiliskForkgetBasiliskSharedgetExternalDirgetPythonBinarygetSystemDirisLinuxisLinuxAarch64isMacOSXisMacOSXArmisWindowslistPackageslistPythonVersionlockExternalDirobtainEnvironmentPathPyPiLinksetBasiliskCheckVersionssetBasiliskForksetBasiliskSharedsetupBasiliskEnvunlockExternalDiruseBasiliskEnvuseSystemDir
Dependencies:dir.expiryfilelockherejsonlitelatticeMatrixpngrappdirsRcppRcppTOMLreticulaterlangrprojrootwithr
