Package: barcodetrackR 1.13.0

Diego Alexander Espinoza

barcodetrackR: Functions for Analyzing Cellular Barcoding Data

barcodetrackR is an R package developed for the analysis and visualization of clonal tracking data. Data required is samples and tag abundances in matrix form. Usually from cellular barcoding experiments, integration site retrieval analyses, or similar technologies.

Authors:Diego Alexander Espinoza [aut, cre], Ryland Mortlock [aut]

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barcodetrackR.pdf |barcodetrackR.html✨
barcodetrackR/json (API)
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Peer review:

Bug tracker:https://github.com/dunbarlabnih/barcodetrackr/issues

On BioConductor:barcodetrackR-1.13.0(bioc 3.20)barcodetrackR-1.12.0(bioc 3.19)

bioconductor-package

25 exports 0.61 score 94 dependencies

Last updated 2 months agofrom:6250e93be7

Exports:barcode_binary_heatmapbarcode_ggheatmapbarcode_ggheatmap_statbarcode_stat_testbias_histogrambias_lineplotbias_ridge_plotchord_diagramclonal_contributionclonal_countclonal_diversitycor_plotcreate_SEdist_plotestimate_barcode_thresholdget_top_cloneslaunchAppmds_plotrank_abundance_plotrank_abundance_stat_testscatter_plotstat_histsubset_SEthresholdthreshold_SE

Dependencies:abindaskpassbase64encBiobaseBiocGenericsbslibcachemcirclizecliclustercolorspacecommonmarkcowplotcpp11crayoncurlDelayedArraydigestdplyrfansifarverfastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggdendroggplot2ggridgesGlobalOptionsgluegridExtragtablehtmltoolshttpuvhttrIRangesisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpermutepillarpkgconfigplyrpromisesproxypurrrR6rappdirsRColorBrewerRcpprlangS4ArraysS4VectorssassscalesshapeshinysourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsveganviridisviridisLitewithrxtableXVectorzlibbioc