Package: apeglm 1.27.1

Anqi Zhu

apeglm: Approximate posterior estimation for GLM coefficients

apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.

Authors:Anqi Zhu [aut, cre], Joshua Zitovsky [ctb], Joseph Ibrahim [aut], Michael Love [aut]

apeglm_1.27.1.tar.gz
apeglm_1.27.1.zip(r-4.5)apeglm_1.27.1.zip(r-4.4)apeglm_1.27.1.zip(r-4.3)
apeglm_1.27.1.tgz(r-4.4-arm64)apeglm_1.27.1.tgz(r-4.4-x86_64)apeglm_1.27.1.tgz(r-4.3-arm64)apeglm_1.27.1.tgz(r-4.3-x86_64)
apeglm_1.27.1.tar.gz(r-4.5-noble)apeglm_1.27.1.tar.gz(r-4.4-noble)
apeglm_1.27.1.tgz(r-4.4-emscripten)apeglm_1.27.1.tgz(r-4.3-emscripten)
apeglm.pdf |apeglm.html✨
apeglm/json (API)
NEWS

# Install 'apeglm' in R:
install.packages('apeglm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:apeglm-1.27.0(bioc 3.20)apeglm-1.26.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

4 exports 2.38 score 39 dependencies 8 dependents 41 mentions

Last updated 29 days agofrom:2f8b7c0d2a

Exports:apeglmbbEstDisplogLikNBsvalue

Dependencies:abindaskpassbbmlebdsmatrixBiobaseBiocGenericscodacrayoncurlDelayedArrayemdbookGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitelatticeMASSMatrixMatrixGenericsmatrixStatsmimemvtnormnumDerivopensslplyrR6RcppRcppEigenRcppNumericalS4ArraysS4VectorsSparseArraySummarizedExperimentsysUCSC.utilsXVectorzlibbioc

Effect size estimation with apeglm

Anqi Zhu, Joseph G. Ibrahim, and Michael I. Love

Rendered fromapeglm.Rmdusingknitr::rmarkdownon Jun 12 2024.

Last update: 2021-05-11
Started: 2017-08-07