Package: apComplex 2.79.0

Denise Scholtens

apComplex: Estimate protein complex membership using AP-MS protein data

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Authors:Denise Scholtens <[email protected]>

apComplex_2.79.0.tar.gz
apComplex_2.79.0.zip(r-4.7)apComplex_2.79.0.zip(r-4.6)apComplex_2.79.0.zip(r-4.5)
apComplex_2.79.0.tgz(r-4.6-any)apComplex_2.79.0.tgz(r-4.5-any)
apComplex_2.79.0.tar.gz(r-4.7-any)apComplex_2.79.0.tar.gz(r-4.6-any)
apComplex_2.79.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
apComplex/json (API)

# Install 'apComplex' in R:
install.packages('apComplex', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • apEX - Example data set for apComplex package
  • apEXG - Example data set for apComplex package
  • gavin06FilteredEstimates - AP-MS data complex estimates
  • gavinBP2006 - Tandem Affinity Purification
  • HMSPCI - High-Throughput Mass Spectromic Protein Complex Identification
  • HMSPCIgraph - High-Throughput Mass Spectromic Protein Complex Identification
  • Krogan - High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes
  • krogan06FilteredEstimates - AP-MS data complex estimates
  • kroganBPMat2006 - Tandem Affinity Purification
  • MBMEcHMSPCI - HMSPCI data complex estimates
  • MBMEcKrogan - Krogan data complex estimates
  • MBMEcTAP - TAP data complex estimates
  • SBMHcHMSPCI - HMSPCI data complex estimates
  • SBMHcTAP - TAP data complex estimates
  • TAP - Tandem Affinity Purification
  • TAPgraph - Tandem Affinity Purification
  • UnRBBcHMSPCI - HMSPCI data complex estimates
  • UnRBBcTAP - TAP data complex estimates
  • yNameTAP - TAP data complex estimates using standard gene names
  • yTAP - YTAP Complexes published Gavin, et al. (2002).

On BioConductor:apComplex-2.79.0(bioc 3.24)apComplex-2.78.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologynetworkinferencemassspectrometrygraphandnetwork

3.72 score 13 scripts 622 downloads 2 mentions 5 exports 40 dependencies

Last updated from:e4ce48dbf5. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR158
linux-devel-x86_64NOTE266
source / vignettesOK246
linux-release-x86_64NOTE256
macos-release-arm64NOTE159
macos-oldrel-arm64NOTE166
windows-develNOTE556
windows-releaseNOTE627
windows-oldrelNOTE531
wasm-releaseOK132

Exports:bhmaxSubgraphfindComplexesmergeComplexesplotComplexsortComplexes

Dependencies:AnnotationDbiaskpassBHBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsgluegraphhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslorg.Sc.sgd.dbpkgconfigpngR6RBGLRgraphvizrlangRSQLiteS4VectorsSeqinfosysvctrsXVector

apComplex

Rendered fromapComplex.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2013-11-01
Started: 2013-11-01