Package: apComplex 2.79.0
Denise Scholtens
apComplex: Estimate protein complex membership using AP-MS protein data
Functions to estimate a bipartite graph of protein complex membership using AP-MS data.
Authors:
apComplex_2.79.0.tar.gz
apComplex_2.79.0.zip(r-4.7)apComplex_2.79.0.zip(r-4.6)apComplex_2.79.0.zip(r-4.5)
apComplex_2.79.0.tgz(r-4.6-any)apComplex_2.79.0.tgz(r-4.5-any)
apComplex_2.79.0.tar.gz(r-4.7-any)apComplex_2.79.0.tar.gz(r-4.6-any)
apComplex_2.79.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
apComplex/json (API)
| # Install 'apComplex' in R: |
| install.packages('apComplex', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- apEX - Example data set for apComplex package
- apEXG - Example data set for apComplex package
- gavin06FilteredEstimates - AP-MS data complex estimates
- gavinBP2006 - Tandem Affinity Purification
- HMSPCI - High-Throughput Mass Spectromic Protein Complex Identification
- HMSPCIgraph - High-Throughput Mass Spectromic Protein Complex Identification
- Krogan - High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes
- krogan06FilteredEstimates - AP-MS data complex estimates
- kroganBPMat2006 - Tandem Affinity Purification
- MBMEcHMSPCI - HMSPCI data complex estimates
- MBMEcKrogan - Krogan data complex estimates
- MBMEcTAP - TAP data complex estimates
- SBMHcHMSPCI - HMSPCI data complex estimates
- SBMHcTAP - TAP data complex estimates
- TAP - Tandem Affinity Purification
- TAPgraph - Tandem Affinity Purification
- UnRBBcHMSPCI - HMSPCI data complex estimates
- UnRBBcTAP - TAP data complex estimates
- yNameTAP - TAP data complex estimates using standard gene names
- yTAP - YTAP Complexes published Gavin, et al. (2002).
On BioConductor:apComplex-2.79.0(bioc 3.24)apComplex-2.78.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologynetworkinferencemassspectrometrygraphandnetwork
Last updated from:e4ce48dbf5. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 164 | ||
| linux-devel-x86_64 | NOTE | 240 | ||
| source / vignettes | OK | 213 | ||
| linux-release-x86_64 | NOTE | 237 | ||
| macos-release-arm64 | NOTE | 150 | ||
| macos-oldrel-arm64 | NOTE | 127 | ||
| windows-devel | NOTE | 535 | ||
| windows-release | NOTE | 515 | ||
| windows-oldrel | NOTE | 528 | ||
| wasm-release | OK | 142 |
Exports:bhmaxSubgraphfindComplexesmergeComplexesplotComplexsortComplexes
Dependencies:AnnotationDbiaskpassBHBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsgluegraphhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslorg.Sc.sgd.dbpkgconfigpngR6RBGLRgraphvizrlangRSQLiteS4VectorsSeqinfosysvctrsXVector
