Package: apComplex 2.71.0

Denise Scholtens

apComplex: Estimate protein complex membership using AP-MS protein data

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Authors:Denise Scholtens <[email protected]>

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apComplex.pdf |apComplex.html✨
apComplex/json (API)

# Install 'apComplex' in R:
install.packages('apComplex', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • HMSPCI - High-Throughput Mass Spectromic Protein Complex Identification
  • HMSPCIgraph - High-Throughput Mass Spectromic Protein Complex Identification
  • Krogan - High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes
  • MBMEcHMSPCI - HMSPCI data complex estimates
  • MBMEcKrogan - Krogan data complex estimates
  • MBMEcTAP - TAP data complex estimates
  • SBMHcHMSPCI - HMSPCI data complex estimates
  • SBMHcTAP - TAP data complex estimates
  • TAP - Tandem Affinity Purification
  • TAPgraph - Tandem Affinity Purification
  • UnRBBcHMSPCI - HMSPCI data complex estimates
  • UnRBBcTAP - TAP data complex estimates
  • apEX - Example data set for apComplex package
  • apEXG - Example data set for apComplex package
  • gavin06FilteredEstimates - AP-MS data complex estimates
  • gavinBP2006 - Tandem Affinity Purification
  • krogan06FilteredEstimates - AP-MS data complex estimates
  • kroganBPMat2006 - Tandem Affinity Purification
  • yNameTAP - TAP data complex estimates using standard gene names
  • yTAP - YTAP Complexes published Gavin, et al. (2002).

On BioConductor:apComplex-2.71.0(bioc 3.20)apComplex-2.70.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

5 exports 1.58 score 43 dependencies 2 mentions

Last updated 2 months agofrom:5131f88b83

Exports:bhmaxSubgraphfindComplexesmergeComplexesplotComplexsortComplexes

Dependencies:AnnotationDbiaskpassBHBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDatagluegraphhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslorg.Sc.sgd.dbpkgconfigplogrpngR6RBGLRgraphvizrlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectorzlibbioc

apComplex

Rendered fromapComplex.Rnwusingutils::Sweaveon Jul 03 2024.

Last update: 2013-11-01
Started: 2013-11-01