Package: aggregateBioVar 1.15.0

Jason Ratcliff

aggregateBioVar: Differential Gene Expression Analysis for Multi-subject scRNA-seq

For single cell RNA-seq data collected from more than one subject (e.g. biological sample or technical replicates), this package contains tools to summarize single cell gene expression profiles at the level of subject. A SingleCellExperiment object is taken as input and converted to a list of SummarizedExperiment objects, where each list element corresponds to an assigned cell type. The SummarizedExperiment objects contain aggregate gene-by-subject count matrices and inter-subject column metadata for individual subjects that can be processed using downstream bulk RNA-seq tools.

Authors:Jason Ratcliff [aut, cre], Andrew Thurman [aut], Michael Chimenti [ctb], Alejandro Pezzulo [ctb]

aggregateBioVar_1.15.0.tar.gz
aggregateBioVar_1.15.0.zip(r-4.5)aggregateBioVar_1.15.0.zip(r-4.4)aggregateBioVar_1.15.0.zip(r-4.3)
aggregateBioVar_1.15.0.tgz(r-4.4-any)aggregateBioVar_1.15.0.tgz(r-4.3-any)
aggregateBioVar_1.15.0.tar.gz(r-4.5-noble)aggregateBioVar_1.15.0.tar.gz(r-4.4-noble)
aggregateBioVar_1.15.0.tgz(r-4.4-emscripten)aggregateBioVar_1.15.0.tgz(r-4.3-emscripten)
aggregateBioVar.pdf |aggregateBioVar.html✨
aggregateBioVar/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/jasonratcliff/aggregatebiovar/issues

On BioConductor:aggregateBioVar-1.15.0(bioc 3.20)aggregateBioVar-1.14.0(bioc 3.19)

bioconductor-package

6 exports 0.49 score 40 dependencies

Last updated 2 months agofrom:9e7eb22839

Exports:aggregateBioVarcountsByCellcountsBySubjectscSubjectssubjectMetaDatasummarizedCounts

Dependencies:abindaskpassBiobaseBiocGenericsclicrayoncurlDelayedArrayfansiGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigR6rlangS4ArraysS4VectorsSingleCellExperimentSparseArraySummarizedExperimentsystibbleUCSC.utilsutf8vctrsXVectorzlibbioc