Package: adSplit 1.83.0

Claudio Lottaz

adSplit: Annotation-Driven Clustering

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Authors:Claudio Lottaz, Joern Toedling

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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
adSplit/json (API)

# Install 'adSplit' in R:

install.packages('adSplit', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

golubKEGGSplits - Examplar splitSet

On BioConductor:adSplit-1.83.0(bioc 3.24)adSplit-1.82.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarray clustering cpp

3.30 score 1 scripts 610 downloads 5 exports 42 dependencies

Last updated from:b7021a48ff. Checks:1 ERROR, 9 OK, 4 NOTE. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	244
linux-devel-arm64	OK	369
linux-devel-x86_64	OK	326
source / vignettes	OK	341
linux-release-arm64	OK	361
linux-release-x86_64	OK	370
macos-release-arm64	NOTE	292
macos-release-x86_64	NOTE	402
macos-oldrel-arm64	NOTE	322
macos-oldrel-x86_64	NOTE	485
windows-devel	OK	286
windows-release	OK	277
windows-oldrel	OK	284
wasm-release	OK	186

Exports:adSplit diana2means drawRandomPS makeEID2PROBESenv randomDiana2means

Dependencies:AnnotationDbi askpass Biobase BiocGenerics Biostrings bit bit64 blob cachem cli cluster cpp11 crayon curl DBI fastmap generics glue GO.db httr IRanges jsonlite KEGGREST lattice lifecycle MASS Matrix memoise mime multtest openssl pkgconfig png R6 rlang RSQLite S4Vectors Seqinfo survival sys vctrs XVector

Annotation-Driven Clustering

Introduction | Annotation-Driven Splits | Empirical p-Values for Splits | Working with Split-Sets | Bibliography

Rendered fromtr_2005_02.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Annotation-Driven Splits	adSplit
2-Means with Hierarchical Initialization	diana2means
Draw sets of probe-sets	drawRandomPS
Examplar splitSet	golubKEGGSplits
Overview Histogram for splitSets	hist,splitSet-method hist.splitSet
Illustrate Split Sets	image,splitSet-method image.splitSet
Generate EID2PROBES environment	makeEID2PROBESenv
Generate null-distributions of DLD-scores	randomDiana2means