Package: XeniumIO 0.99.8

Marcel Ramos

XeniumIO: Import and represent Xenium data from the 10X Xenium Analyzer

The package allows users to readily import spatial data obtained from the 10X Xenium Analyzer pipeline. Supported formats include 'parquet', 'h5', and 'mtx' files. The package mainly represents data as SpatialExperiment objects.

Authors:Marcel Ramos [aut, cre], Dario Righelli [ctb], Estella Dong [ctb]

XeniumIO_0.99.8.tar.gz
XeniumIO_0.99.8.zip(r-4.5)XeniumIO_0.99.8.zip(r-4.4)
XeniumIO_0.99.8.tgz(r-4.5-any)XeniumIO_0.99.8.tgz(r-4.4-any)
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XeniumIO_0.99.8.tgz(r-4.4-emscripten)
XeniumIO.pdf |XeniumIO.html✨
XeniumIO/json (API)
NEWS

# Install 'XeniumIO' in R:
install.packages('XeniumIO', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/xeniumio/issues

On BioConductor:XeniumIO-0.99.8(bioc 3.21)

softwareinfrastructuredataimportsinglecellspatialu24ca289073

4.40 score 2 scripts 96 downloads 3 exports 85 dependencies

Last updated 1 months agofrom:5e97a63a2c. Checks:4 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 24 2025
R-4.5-winNOTEMar 24 2025
R-4.5-macNOTEMar 24 2025
R-4.5-linuxNOTEMar 24 2025
R-4.4-winOKMar 24 2025
R-4.4-macOKMar 24 2025
R-4.4-linuxOKMar 24 2025

Exports:importTENxXeniumXeniumFile

Dependencies:abindaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObitbit64bitopsblobcachemclicliprcpp11crayoncurlDBIdbplyrDelayedArraydplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglueh5mreadHDF5ArrayhmshttrIRangesjsonlitelatticelifecyclemagickmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6RcppRCurlreadrrhdf5rhdf5filtersRhdf5librjsonrlangRSQLiteS4ArraysS4VectorsSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsysTENxIOtibbletidyrtidyselecttzdbUCSC.utilsutf8vctrsVisiumIOvroomwithrXVector

XeniumIO: Import 10X Genomics Xenium Analyzer Data

Marcel Ramos

Rendered fromXeniumIO.Rmdusingknitr::rmarkdownon Mar 24 2025.

Last update: 2025-02-11
Started: 2024-10-01

Readme and manuals

Help Manual

Help pageTopics
XeniumIO: Import and represent Xenium data from the 10X Xenium AnalyzerXeniumIO-package XeniumIO
A class to represent Xenium output data.TENxXenium import,TENxXenium,ANY,ANY-method TENxXenium TENxXenium-class
A minimal class to represent Xenium metadata.XeniumFile import,XeniumFile,ANY,ANY-method XeniumFile XeniumFile-class