Package: XVector 0.47.0
Hervé Pagès
XVector: Foundation of external vector representation and manipulation in Bioconductor
Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).
Authors:
XVector_0.47.0.tar.gz
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XVector.pdf |XVector.html✨
XVector/json (API)
| # Install 'XVector' in R: |
| install.packages('XVector', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/xvector/issues
On BioConductor:XVector-0.47.0(bioc 3.21)XVector-0.46.0(bioc 3.20)
infrastructuredatarepresentationbioconductor-packagecore-package
Last updated 23 days agofrom:7fd9ca2824. Checks:OK: 1 WARNING: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 21 2024 |
| R-4.5-win-x86_64 | WARNING | Nov 21 2024 |
| R-4.5-linux-x86_64 | WARNING | Nov 21 2024 |
| R-4.4-win-x86_64 | WARNING | Nov 21 2024 |
| R-4.4-mac-x86_64 | WARNING | Nov 21 2024 |
| R-4.4-mac-aarch64 | WARNING | Nov 21 2024 |
| R-4.3-win-x86_64 | WARNING | Nov 21 2024 |
| R-4.3-mac-x86_64 | WARNING | Nov 21 2024 |
| R-4.3-mac-aarch64 | WARNING | Nov 21 2024 |
Exports:as.data.framebindROWScoercecompactduplicatedduplicated.XRawListelementNROWSextractListextractROWSgetListElementis.unsortedmatchopen_input_filesorderparallel_slot_namespathpcomparerankRdaCollectionrdaPathRdsCollectionrelistrelistToClassrevreverseSharedRawSharedRaw.readSharedRaw.readComplexesSharedRaw.readIntsSharedRaw.writeSharedRaw.writeIntsSharedVector.compareSharedVector.copyshowshowAsCellslicesubseqsubseq<-toStringunsplit_list_of_XVectorListupdateObjectviewMaxsviewMeansviewMinsViewsviewSumsviewWhichMaxsviewWhichMinswidthwindowsXDoubleXIntegerXNumericXRawxvcopyXVectorList
Dependencies:BiocGenericsgenericsIRangesS4Vectorszlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Object compaction | compact compact,ANY-method compact,XVector-method compact,XVectorList-method xvcopy xvcopy,SharedVector-method xvcopy,SharedVector_Pool-method xvcopy,XRawList-method xvcopy,XVector-method |
| Intra range transformations of an XVectorList object | intra-range-methods narrow narrow,XVectorList-method threebands threebands,XVectorList-method windows,XVectorList-method |
| OnDiskRaw objects | class:OnDiskRaw length,OnDiskRaw-method OnDiskRaw OnDiskRaw-class |
| Reverse an XVector or XVectorList object | rev,XVector-method reverse,SharedRaw-method reverse,SharedVector_Pool-method reverse,XVector-method reverse,XVectorList-method reverse-methods |
| Slice an XInteger or XDouble object | slice,integer-method slice,numeric-method slice,XDouble-method slice,XInteger-method slice-methods |
| Update an object of a class defined in the XVector package to its current class definition | updateObject,XIntegerViews-method updateObject,XVector-method updateObject-methods |
| Summarize views on an XInteger or XDouble object | view-summarization-methods viewMaxs,XDoubleViews-method viewMaxs,XIntegerViews-method viewMeans,XDoubleViews-method viewMeans,XIntegerViews-method viewMins,XDoubleViews-method viewMins,XIntegerViews-method viewSums,XDoubleViews-method viewSums,XIntegerViews-method viewWhichMaxs,XDoubleViews-method viewWhichMaxs,XIntegerViews-method viewWhichMins,XDoubleViews-method viewWhichMins,XIntegerViews-method |
| The XDoubleViews class | ==,numeric,XDoubleViews-method ==,XDouble,XDoubleViews-method ==,XDoubleViews,numeric-method ==,XDoubleViews,XDouble-method ==,XDoubleViews,XDoubleViews-method class:XDoubleViews show,XDoubleViews-method Views,numeric-method Views,XDouble-method XDoubleViews XDoubleViews-class |
| The XIntegerViews class | ==,integer,XIntegerViews-method ==,XInteger,XIntegerViews-method ==,XIntegerViews,integer-method ==,XIntegerViews,XInteger-method ==,XIntegerViews,XIntegerViews-method class:XIntegerViews show,XIntegerViews-method Views,integer-method Views,XInteger-method XIntegerViews XIntegerViews-class |
| XRawList objects | class:XRawList XRawList XRawList-class |
| Comparing and ordering the list elements of XRawList objects | <=,XRawList,XRawList-method ==,XRawList,XRawList-method duplicated,XRawList-method duplicated.XRawList is.unsorted,XRawList-method match,XRawList,XRawList-method order,XRawList-method pcompare pcompare,XRawList,XRawList-method rank,XRawList-method XRawList-comparison |
| XVector objects | ==,XVector,XVector-method as.integer,XInteger-method as.integer,XRaw-method as.numeric,XDouble-method as.numeric,XVector-method as.raw,XRaw-method as.vector,XDouble-method as.vector,XInteger-method as.vector,XRaw-method bindROWS,XVector-method class:XDouble class:XInteger class:XRaw class:XVector coerce,integer,XVector-method coerce,numeric,XDouble-method coerce,numeric,XInteger-method coerce,numeric,XRaw-method coerce,numeric,XVector-method coerce,raw,XRaw-method coerce,raw,XVector-method length,XVector-method show,XDouble-method show,XVector-method subseq subseq,XVector-method subseq<- subseq<-,XVector-method XDouble XDouble-class XInteger XInteger-class XNumeric XRaw XRaw-class XVector XVector-class |
| XVectorList objects | as.data.frame,GroupedIRanges-method bindROWS,XVectorList-method class:GroupedIRanges class:XVectorList elementNROWS,XVectorList-method GroupedIRanges GroupedIRanges-class names,XVectorList-method names<-,XVectorList-method parallel_slot_names,GroupedIRanges-method parallel_slot_names,XVectorList-method show,GroupedIRanges-method showAsCell,XVectorList-method subseq,XVectorList-method unsplit_list_of_XVectorList width,XVectorList-method XVectorList XVectorList-class [,XVectorList-method |
