Package: VennDetail 1.29.0

Kai Guo

VennDetail: Comprehensive Visualization and Analysis of Multi-Set Intersections

A comprehensive package for visualizing multi-set intersections and extracting detailed subset information. VennDetail generates high-resolution visualizations including traditional Venn diagrams, Venn-pie plots, and UpSet-style plots. It provides functions to extract and combine subset details with user datasets in various formats. The package is particularly useful for bioinformatics applications but can be used for any multi-set analysis.

Authors:Kai Guo [aut, cre], Brett McGregor [aut], James Porter [aut], Junguk Hur [aut]

VennDetail_1.29.0.tar.gz
VennDetail_1.29.0.zip(r-4.7)VennDetail_1.29.0.zip(r-4.6)VennDetail_1.29.0.zip(r-4.5)
VennDetail_1.29.0.tgz(r-4.6-any)VennDetail_1.29.0.tgz(r-4.5-any)
VennDetail_1.29.0.tar.gz(r-4.7-any)VennDetail_1.29.0.tar.gz(r-4.6-any)
VennDetail_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
VennDetail/json (API)

# Install 'VennDetail' in R:

install.packages('VennDetail', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/guokai8/venndetail/issues

Datasets:

T2DM - T2DM Dataset

On BioConductor:VennDetail-1.29.0(bioc 3.24)VennDetail-1.28.0(bioc 3.23)

datarepresentation graphandnetwork visualization software extract venndiagram

8.17 score 30 stars 122 scripts 3 mentions 22 exports 72 dependencies

Last updated from:352913de07. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	214
linux-devel-x86_64	OK	238
source / vignettes	OK	202
linux-release-x86_64	OK	239
macos-release-arm64	OK	92
macos-oldrel-arm64	OK	106
windows-devel	OK	106
windows-release	OK	113
windows-oldrel	OK	122
wasm-release	OK	173

Exports:compareVenn create_interactive_vennpie detail dplot getFeature getSet loadVenn make_subset make.subset newVenn result rowjoin saveVenn setcolor upset_plot upsetPlot vennApp venndetail vennDiagram vennEnrichment vennpie vennStats

Dependencies:askpass base64enc bslib cachem cli commonmark cpp11 crosstalk curl data.table digest dplyr DT evaluate farver fastmap fontawesome fs generics ggplot2 glue gridExtra gtable highr htmltools htmlwidgets httpuv httr isoband jquerylib jsonlite knitr labeling later lazyeval lifecycle magrittr memoise mime openssl otel patchwork pillar pkgconfig plotly promises purrr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown S7 sass scales shiny sourcetools stringi stringr sys tibble tidyr tidyselect tinytex utf8 vctrs viridisLite withr xfun xtable yaml

The VennDetail package

Rendered fromVennDetail.Rmdusingknitr::rmarkdown

Last update: 2025-08-12
Started: 2019-01-06

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
VennDetail: Comprehensive Visualization and Analysis of Multi-Set Intersections	VennDetail-package VennDetail
Give first colname as RowNxyz	.add_colnames
make table for venndetail modified from make.truth.table (VennDiagram)	.make.table
Subset a Venn object	[.Venn
Extract column from a Venn object	$.Venn
Utility functions for VennDetail package	as.data.frame.Venn
Compare two Venn objects	compareVenn
Create an interactive vennpie chart with plotly	create_interactive_vennpie
Get subset details from a Venn object	detail detail,Venn-method
Get dimensions of a Venn object	dim.Venn
Create a bar plot of subset counts	dplot dplot,Venn-method
Extract feature data for specific subsets	getFeature getFeature,Venn-method
Extract specific subsets from a Venn object	getSet getSet,Venn-method
Return the first or last parts of a Venn object	head.Venn tail.Venn
Load a Venn object from a file	loadVenn
Create subsets from a list of sets	make_subset
Get subset from list of input groups	make.subset
Merge two or more venndetail obejcts	merge.Venn
Extract subset names from a Venn object	names.Venn
Create a new Venn object	newVenn
Plot a Venn object	plot.Venn
Print method for upset_grob objects	print.upset_grob
Extract results from a Venn object	result result,Venn-method
Join data.frames by row names or specified columns	rowjoin rowjoin,data.frame,data.frame-method
Save a Venn object to a file	saveVenn
return colors with given a vector	setcolor
Show the summary of venn object	show Venn show,Venn-method
Give summary information of Venn object	summary.Venn
T2DM Dataset	T2DM
Create an UpSet plot for set intersection visualization	upset_plot
Create an UpSet plot	upsetPlot
Create an UpSet plot for a Venn object	upsetPlot,Venn-method
Venn Class	Venn-class
Create an interactive Venn diagram app	vennApp
Create a Venn object for set analysis	venndetail
Create a Venn diagram	vennDiagram
Create a traditional Venn diagram	vennDiagram,Venn-method
Perform enrichment analysis on set intersections	vennEnrichment
Create a Venn-pie visualization	vennpie
Create a Venn-pie visualization	vennpie,Venn-method
Perform statistical tests on set intersections	vennStats
Perform statistical tests on set intersections	vennStats,Venn-method