Package: VaSP 1.25.0

Huihui Yu

VaSP: Quantification and Visualization of Variations of Splicing in Population

Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures in a population. (Warning: The visualizing function is removed due to the dependent package Sushi deprecated. If you want to use it, please change back to an older version.)

Authors:Huihui Yu [aut, cre], Qian Du [aut], Chi Zhang [aut]

VaSP_1.25.0.tar.gz
VaSP_1.25.0.zip(r-4.7)VaSP_1.25.0.zip(r-4.6)VaSP_1.25.0.zip(r-4.5)
VaSP_1.25.0.tgz(r-4.6-any)VaSP_1.25.0.tgz(r-4.5-any)
VaSP_1.25.0.tar.gz(r-4.7-any)VaSP_1.25.0.tar.gz(r-4.6-any)
VaSP_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
VaSP/json (API)
NEWS

# Install 'VaSP' in R:
install.packages('VaSP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yuhuihui2011/vasp/issues

Datasets:

On BioConductor:VaSP-1.23.0(bioc 3.23)VaSP-1.22.0(bioc 3.22)

rnaseqalternativesplicingdifferentialsplicingstatisticalmethodvisualizationpreprocessingclusteringdifferentialexpressionkeggimmunooncology3s-scoresalternative-splicingballgownrna-seqsplicingsqtlstatistics

4.78 score 3 stars 3 scripts 353 downloads 5 exports 82 dependencies

Last updated from:e2d52d774b. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR192
linux-devel-x86_64NOTE426
source / vignettesOK307
linux-release-x86_64NOTE358
macos-release-arm64NOTE329
macos-oldrel-arm64NOTE191
windows-develNOTE445
windows-releaseNOTE263
windows-oldrelNOTE276
wasm-releaseOK173

Exports:BMfindergetDepthgetGeneinfospliceGenespliceGenome

Dependencies:abindannotateAnnotationDbiaskpassballgownBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcigarillocliclustercodetoolscpp11crayoncurlDBIDelayedArrayedgeRfastmapformatRfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomicAlignmentsGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitMatrixMatrixGenericsmatrixStatsmemoisemgcvmimenlmeopensslpkgconfigpngR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraystatmodSummarizedExperimentsurvivalsvasysUCSC.utilsvctrsXMLxtableXVectoryaml

VaSP: Quantification and Visualization of Variations of Splicing in Population

Huihui Yu, Qian Du and Chi Zhang

Rendered fromVaSP.Rmdusingknitr::rmarkdownon Apr 29 2026.

Last update: 2022-01-07
Started: 2021-02-14