Package: UNDO 1.49.0

Niya Wang

UNDO: Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

Authors:Niya Wang <wangny@vt.edu>

UNDO_1.49.0.tar.gz
UNDO_1.49.0.zip(r-4.5)UNDO_1.49.0.zip(r-4.4)UNDO_1.49.0.zip(r-4.3)
UNDO_1.49.0.tgz(r-4.5-any)UNDO_1.49.0.tgz(r-4.4-any)UNDO_1.49.0.tgz(r-4.3-any)
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UNDO.pdf |UNDO.html✨
UNDO/json (API)
NEWS

# Install 'UNDO' in R:
install.packages('UNDO', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:UNDO-1.49.0(bioc 3.21)UNDO-1.48.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software

4.00 score 6 scripts 273 downloads 5 mentions 6 exports 6 dependencies

Last updated 5 months agofrom:0f29ad6895. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 28 2025
R-4.5-winOKFeb 28 2025
R-4.5-macOKFeb 28 2025
R-4.5-linuxOKFeb 28 2025
R-4.4-winOKFeb 28 2025
R-4.4-macOKFeb 28 2025
R-4.3-winOKFeb 28 2025
R-4.3-macOKFeb 28 2025

Exports:calc_E1dimension_reductiongene_expression_inputmarker_gene_selectionmixing_matrix_computationtwo_source_deconv

Dependencies:BiobaseBiocGenericsbootgenericsMASSnnls

UNDO Usage

Rendered fromUNDO-vignette.Rnwusingutils::Sweaveon Feb 28 2025.

Last update: 2014-07-17
Started: 2014-03-20