Package: UCell 2.11.1
UCell: Rank-based signature enrichment analysis for single-cell data
UCell is a package for evaluating gene signatures in single-cell datasets. UCell signature scores, based on the Mann-Whitney U statistic, are robust to dataset size and heterogeneity, and their calculation demands less computing time and memory than other available methods, enabling the processing of large datasets in a few minutes even on machines with limited computing power. UCell can be applied to any single-cell data matrix, and includes functions to directly interact with SingleCellExperiment and Seurat objects.
Authors:
UCell_2.11.1.tar.gz
UCell_2.11.1.zip(r-4.5)UCell_2.11.1.zip(r-4.4)UCell_2.11.1.zip(r-4.3)
UCell_2.11.1.tgz(r-4.4-any)UCell_2.11.1.tgz(r-4.3-any)
UCell_2.11.1.tar.gz(r-4.5-noble)UCell_2.11.1.tar.gz(r-4.4-noble)
UCell_2.11.1.tgz(r-4.4-emscripten)UCell_2.11.1.tgz(r-4.3-emscripten)
UCell.pdf |UCell.html✨
UCell/json (API)
NEWS
# Install 'UCell' in R: |
install.packages('UCell', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/carmonalab/ucell/issues
- sample.matrix - Sample dataset to test UCell installation
On BioConductor:UCell-2.11.1(bioc 3.21)UCell-2.10.1(bioc 3.20)
singlecellgenesetenrichmenttranscriptomicsgeneexpressioncellbasedassays
Last updated 2 months agofrom:10bccc9cc4. Checks:OK: 4 NOTE: 2 ERROR: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 01 2024 |
R-4.5-win | NOTE | Dec 01 2024 |
R-4.5-linux | NOTE | Dec 01 2024 |
R-4.4-win | OK | Dec 01 2024 |
R-4.4-mac | OK | Dec 01 2024 |
R-4.3-win | OK | Dec 01 2024 |
R-4.3-mac | ERROR | Dec 01 2024 |
Exports:AddModuleScore_UCellScoreSignatures_UCellSmoothKNNStoreRankings_UCell
Dependencies:abindaskpassassortheadBHBiobaseBiocGenericsBiocNeighborsBiocParallelcodetoolscpp11crayoncurldata.tableDelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RcppS4ArraysS4VectorsSingleCellExperimentsnowSparseArraySummarizedExperimentsysUCSC.utilsXVectorzlibbioc
Gene signature scoring with UCell
Rendered fromUCell_vignette_basic.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2023-10-25
Started: 2022-02-03
Using UCell with SingleCellExperiment
Rendered fromUCell_sce.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2023-10-25
Started: 2022-08-05
Using UCell with Seurat
Rendered fromUCell_Seurat.Rmd
usingknitr::rmarkdown
on Dec 01 2024.Last update: 2023-10-25
Started: 2022-08-05