Package: TreeAndLeaf 1.25.0
Mauro Castro
TreeAndLeaf: Displaying binary trees with focus on dendrogram leaves
TreeAndLeaf implements a hybrid layout strategy that enhances leaf-level visualization in dendrograms. By integrating force-directed graph and tree layout algorithms, it enables projection of multiple layers of information onto graph–tree diagrams.
Authors:
TreeAndLeaf_1.25.0.tar.gz
TreeAndLeaf_1.25.0.zip(r-4.7)TreeAndLeaf_1.25.0.zip(r-4.6)TreeAndLeaf_1.25.0.zip(r-4.5)
TreeAndLeaf_1.25.0.tgz(r-4.6-any)TreeAndLeaf_1.25.0.tgz(r-4.5-any)
TreeAndLeaf_1.25.0.tar.gz(r-4.7-any)TreeAndLeaf_1.25.0.tar.gz(r-4.6-any)
TreeAndLeaf_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
TreeAndLeaf/json (API)
NEWS
| # Install 'TreeAndLeaf' in R: |
| install.packages('TreeAndLeaf', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sysbiolab/treeandleaf/issues
- phylo_species - Species metadata from STRING-db v11
- phylo_tree - Species tree from STRING-db v11
- spdata - Genome statistics for eukaryotes with complete genome sequence
On BioConductor:TreeAndLeaf-1.25.0(bioc 3.24)TreeAndLeaf-1.24.0(bioc 3.23)
graphandnetworknetworkvisualizationdatarepresentationsoftwaresystemsbiologybinary-treebinary-tree-visualizationdendrogramreorganizing-dendrograms
Last updated from:769dd7d904. Checks:1 WARNING, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 156 | ||
| linux-devel-x86_64 | OK | 175 | ||
| source / vignettes | OK | 194 | ||
| linux-release-x86_64 | OK | 219 | ||
| macos-release-arm64 | OK | 112 | ||
| macos-oldrel-arm64 | OK | 145 | ||
| windows-devel | OK | 98 | ||
| windows-release | OK | 94 | ||
| windows-oldrel | OK | 92 | ||
| wasm-release | OK | 130 |
Exports:formatTreetreeAndLeaf
Dependencies:apeclicpp11digestfarverglueigraphlabelinglatticelifecyclemagrittrMatrixnlmepkgconfigR6RColorBrewerRcppRedeRrlangscalesvctrsviridisLite
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| TreeAndLeaf: A graph layout for binary trees with focus on dendrogram leaves. | TreeAndLeaf-package TreeAndLeaf |
| A theme function for tree-and-leaf igraph objects. | formatTree |
| Species metadata from STRING-db v11 | phylo_species |
| Species tree from STRING-db v11 | phylo_tree |
| Genome statistics for eukaryotes with complete genome sequence | spdata |
| Layout a TreeAndLeaf diagram. | treeAndLeaf |
