Package: TreeAndLeaf 1.19.0

Milena A. Cardoso

TreeAndLeaf: Displaying binary trees with focus on dendrogram leaves

The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.

Authors:Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro

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TreeAndLeaf/json (API)
NEWS

# Install 'TreeAndLeaf' in R:

install.packages('TreeAndLeaf', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

phylo_species - Species metadata from STRING-db v11
phylo_tree - Species tree from STRING-db v11
spdata - Genome statistics for eukaryotes with complete genome sequence

On BioConductor:TreeAndLeaf-1.19.0(bioc 3.21)TreeAndLeaf-1.18.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

infrastructure graphandnetwork software network visualization datarepresentation

4.20 score 16 scripts 268 downloads 2 exports 24 dependencies

Last updated 24 days agofrom:cc7657b0ba. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 31 2024
R-4.5-win	OK	Oct 31 2024
R-4.5-linux	OK	Oct 31 2024
R-4.4-win	OK	Oct 31 2024
R-4.4-mac	OK	Oct 31 2024
R-4.3-win	OK	Oct 31 2024
R-4.3-mac	OK	Oct 31 2024

Exports:formatTree treeAndLeaf

Dependencies:ape cli colorspace cpp11 digest farver glue igraph labeling lattice lifecycle magrittr Matrix munsell nlme pkgconfig R6 RColorBrewer Rcpp RedeR rlang scales vctrs viridisLite

TreeAndLeaf: A graph layout strategy for binary trees with focus on the leaves

Milena A Cardoso, Luis E A Rizzardi, Leonardo W Kume, Sheyla Trefflich, Clarice Groeneveld, Mauro A A Castro

Rendered fromTreeAndLeaf.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2021-08-28
Started: 2019-08-20

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
TreeAndLeaf: A graph layout for binary trees with focus on dendrogram leaves.	TreeAndLeaf-package TreeAndLeaf
A theme function for tree-and-leaf igraph objects.	formatTree
Species metadata from STRING-db v11	phylo_species
Species tree from STRING-db v11	phylo_tree
Genome statistics for eukaryotes with complete genome sequence	spdata
Layout a TreeAndLeaf diagram.	treeAndLeaf