Package: TargetScore 1.45.0
Yue Li
TargetScore: TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information
Infer the posterior distributions of microRNA targets by probabilistically modelling the likelihood microRNA-overexpression fold-changes and sequence-based scores. Variaitonal Bayesian Gaussian mixture model (VB-GMM) is applied to log fold-changes and sequence scores to obtain the posteriors of latent variable being the miRNA targets. The final targetScore is computed as the sigmoid-transformed fold-change weighted by the averaged posteriors of target components over all of the features.
Authors:
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TargetScore.pdf |TargetScore.html✨
TargetScore/json (API)
NEWS
| # Install 'TargetScore' in R: |
| install.packages('TargetScore', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:TargetScore-1.45.0(bioc 3.21)TargetScore-1.44.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 23 days agofrom:d419059879. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | NOTE | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 31 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | NOTE | Oct 31 2024 |
| R-4.3-mac | NOTE | Oct 31 2024 |
Exports:bsxfun.sedot.extgetTargetScoresinitializationlogmvgammalogsumexpsort_componentstargetScorevbgmmvboundvexpvmax
