Package: TTMap 1.27.0

Rachel Jeitziner

TTMap: Two-Tier Mapper: a clustering tool based on topological data analysis

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Authors:Rachel Jeitziner

TTMap_1.27.0.tar.gz
TTMap_1.27.0.zip(r-4.5)TTMap_1.27.0.zip(r-4.4)TTMap_1.27.0.zip(r-4.3)
TTMap_1.27.0.tgz(r-4.4-any)TTMap_1.27.0.tgz(r-4.3-any)
TTMap_1.27.0.tar.gz(r-4.5-noble)TTMap_1.27.0.tar.gz(r-4.4-noble)
TTMap_1.27.0.tgz(r-4.4-emscripten)TTMap_1.27.0.tgz(r-4.3-emscripten)
TTMap.pdf |TTMap.html✨
TTMap/json (API)

Peer review:

On BioConductor:TTMap-1.27.0(bioc 3.20)TTMap-1.26.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

15 exports 0.61 score 55 dependencies 1 mentions

Last updated 2 months agofrom:09d64ca3e6

Exports:calcul_ecalcul_e_singlecontrol_adjustmentgenerate_correlationgenerate_euclideangenerate_mismatch_distancegenerate_p_val_correlationgenerate_single_cell_complete_mismatchgenerate_single_cell_mismatch_with_parameterhyperrectangle_deviation_assessmentmake_matricesread_pclttmapttmap_sgn_geneswrite_pcl

Dependencies:abindaskpassbase64encBiobaseBiocGenericsbslibcachemclicolorRampscrayoncurlDelayedArraydigestevaluatefastmapfontawesomefsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehighrhtmltoolshtmlwidgetshttrIRangesjquerylibjsonliteknitrlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslR6rappdirsrglrlangrmarkdownS4ArraysS4VectorssassSparseArraySummarizedExperimentsystinytexUCSC.utilsxfunXVectoryamlzlibbioc